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Jan 13 2023

floca triaged T29442: [Perfusion] Support of OSIPI Caplex as Normal priority.
Jan 13 2023, 3:42 PM · Moved to git.dkfz.de, Request for Discussion, MITK

Jan 11 2023

kislinsk closed T29292: Unsupported pixel types as Wontfix.

We see and feel you. Considering the circumstances that Ralf mentioned (it's basically an ITK issue/contribution) I would anyway go for a Won't Fix here on our MITK side for now, until ITK provides the functionalities for such data types. Okay? :)

Jan 11 2023, 1:01 PM · Request for Discussion, MITK
kislinsk moved T29294: Extend &/or Test nnUnet(v2) on Windows from MITK Meeting to Backlog on the Request for Discussion board.
Jan 11 2023, 12:18 PM · MITK (v2023.12), Request for Discussion
kislinsk claimed T29412: List of MITK publications on web page is not up to date.
Jan 11 2023, 12:12 PM · MITK
kislinsk triaged T29437: [SEG] Add TotalSegmentator as High priority.

As it is a really nice user-friendly feature, we have a high interest in getting TotalSegmenter integrated soon into MITK.

Jan 11 2023, 11:49 AM · MITK

Dec 22 2022

kislinsk added a comment to T24398: Dicom plugin: Retrieve does not work.

Have you pushed your clean ups? Not that your efforts get lost. 😉

Dec 22 2022, 12:17 PM · MITK (v2024.12)

Dec 19 2022

floca added a comment to T24398: Dicom plugin: Retrieve does not work.

Our side or also the CTK part.

Hm, lets put it as known issue and discuss its priority when we plan the spring release.

Only looked into our side so far. I'll create a separate task and push my clean-up that I already did so far.

Dec 19 2022, 10:43 AM · MITK (v2024.12)

Dec 14 2022

floca moved T29294: Extend &/or Test nnUnet(v2) on Windows from Backlog to MITK Meeting on the Request for Discussion board.
Dec 14 2022, 11:43 AM · MITK (v2023.12), Request for Discussion
floca moved T29437: [SEG] Add TotalSegmentator from Backlog to Segmentation on the MITK (v2023.04) board.
Dec 14 2022, 8:26 AM · MITK
floca moved T29437: [SEG] Add TotalSegmentator from Backlog to MITK Meeting on the Request for Discussion board.
Dec 14 2022, 8:26 AM · MITK
floca renamed T29437: [SEG] Add TotalSegmentator from [SEG] Add Totel to [SEG] Add TotalSegmentator.
Dec 14 2022, 8:25 AM · MITK
floca created T29437: [SEG] Add TotalSegmentator.
Dec 14 2022, 8:25 AM · MITK

Dec 13 2022

kislinsk moved T29432: [worklist] mitk-flow preload first task from Backlog to MITK Meeting on the Request for Discussion board.
Dec 13 2022, 8:55 PM · MITK
kislinsk added a project to T29432: [worklist] mitk-flow preload first task: Request for Discussion.
Dec 13 2022, 8:54 PM · MITK

Dec 12 2022

kislinsk triaged T29381: Move Multilabel classes to Core module as Low priority.

The hash above doesn't seem to be auto-linked. So here it is: rMITKa73e482c0387: moved labelset-related classes out from core

Dec 12 2022, 11:27 AM · MITK, Request for Discussion
kislinsk triaged T29389: Python utility module as Normal priority.

A big leap into the Python direction would be to finally resolve T27923: Integrate possibility to execute Python Code in MITK , which is complete for a while now but we weren't able to figure out why it fails on Ubuntu build clients. Since the ITK v5 upgrade, we also need to adjust a little more I guess.

Dec 12 2022, 11:25 AM · Moved to git.dkfz.de, MITK (v2024.12)

Nov 30 2022

kalali removed a subtask for T27613: Improve reinit behavior: Unknown Object (Maniphest Task).
Nov 30 2022, 2:08 PM · Request for Discussion, MITK (v2023.04)
kalali removed a subtask for T27613: Improve reinit behavior: T29094: Deleting a data node causes global reset.
Nov 30 2022, 2:08 PM · Request for Discussion, MITK (v2023.04)
kalali closed T27613: Improve reinit behavior as Resolved.

Adding a data node reset-geometry-action was a first step and enough to tackle this issue. If there are more requirements for some "intelligence", new tasks need to be opened.

Nov 30 2022, 2:07 PM · Request for Discussion, MITK (v2023.04)
kalali updated the task description for T29403: [mxn multi widget] Concept for crosshair data type.
Nov 30 2022, 2:04 PM · MITK (v2023.04)
kislinsk moved T27189: REST API for data storage from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · Moved to git.dkfz.de, MITK (v2024.12), Restricted Project, Request for Discussion
kislinsk moved T29140: [Selection widget] Optional selection can not be removed if a fitting node is always found from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk moved T27613: Improve reinit behavior from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · Request for Discussion, MITK (v2023.04)
kislinsk moved T27090: Provide standard NodePredicates from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk moved T29210: Clarify / remove axis-labeling for anatomical planes from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 12:23 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk edited projects for T28557: Cannot load segmentations from KITS challenge due to unknown pixel type, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:21 PM · Moved to git.dkfz.de, MITK, Request for Discussion
kislinsk edited projects for T29381: Move Multilabel classes to Core module, added: MITK; removed MITK (v2023.04).
Nov 30 2022, 12:21 PM · MITK, Request for Discussion
floca closed T16132: Allow segmentation with several images as Wontfix.
Nov 30 2022, 12:16 PM · MITK (v2023.04), Request for Discussion, Bugzilla
floca moved T27809: [Segmentation Utilities] "Labels" tabs in operations of Utilities view is empty from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 12:03 PM · MITK (v2023.12), Request for Discussion
floca moved T29362: [mxn multi widget] Plane suggestion of QmitkSlicesInterpolator does not work correctly from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 12:00 PM · Request for Discussion, MITK (v2023.04)
floca moved T29402: [mxn multi widget] Concept for blocking individual render windows from In candidates to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 11:58 AM · MITK (v2023.04)
floca moved T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 11:39 AM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Request for Discussion
floca added a comment to T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary".

Also regard T25445: MultiLabel segmentation mapper is very slow

Nov 30 2022, 11:39 AM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Request for Discussion
floca moved T25445: MultiLabel segmentation mapper is very slow from In candidates to Segmentation on the MITK (v2023.04) board.

This issue should also be regarded if T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" is done.

Nov 30 2022, 11:38 AM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
floca triaged T29390: How to ease the handling of external generated segmentations as Normal priority.
Nov 30 2022, 11:17 AM · MITK (v2024.06)
floca renamed T29390: How to ease the handling of external generated segmentations from How to easy the handling of external generated segmentations to How to ease the handling of external generated segmentations.
Nov 30 2022, 11:14 AM · MITK (v2024.06)
floca moved T29381: Move Multilabel classes to Core module from In candidates to Backlog on the MITK (v2023.04) board.
Nov 30 2022, 11:13 AM · MITK, Request for Discussion
floca moved T28884: MITK Flowbench -Save Seg not working, due to file naming issues from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 10:23 AM · MITK (v2023.04), Request for Discussion, Kaapana (internal)
floca moved T29210: Clarify / remove axis-labeling for anatomical planes from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:21 AM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
floca moved T25445: MultiLabel segmentation mapper is very slow from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 10:09 AM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kalali moved T29403: [mxn multi widget] Concept for crosshair data type from Backlog to mxn MultiWidget on the MITK (v2023.04) board.
Nov 30 2022, 9:53 AM · MITK (v2023.04)
kalali edited projects for T29403: [mxn multi widget] Concept for crosshair data type, added: MITK (v2023.04); removed MITK.
Nov 30 2022, 9:53 AM · MITK (v2023.04)
kalali moved T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 9:51 AM · Moved to git.dkfz.de, MITK
kalali edited projects for T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI, added: MITK (v2023.04); removed MITK.
Nov 30 2022, 9:51 AM · Moved to git.dkfz.de, MITK
kalali moved T27090: Provide standard NodePredicates from Backlog to In candidates on the MITK (v2023.04) board.

This is also related to T29381: Move Multilabel classes to Core module.

Nov 30 2022, 9:49 AM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kalali added a comment to T29381: Move Multilabel classes to Core module.

consider rMITKa73e482c0387: moved labelset-related classes out from core

Nov 30 2022, 9:48 AM · MITK, Request for Discussion
kalali edited projects for T27090: Provide standard NodePredicates, added: MITK (v2023.04); removed MITK, Next Milestone, Restricted Project.
Nov 30 2022, 9:47 AM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kalali removed a project from T29090: [3D Segmentation] Threshold tool preview draws contours in green and not in the active label color. : Next Milestone.
Nov 30 2022, 9:46 AM · MITK (v2024.12), Request for Discussion, Checklist
kalali moved T27613: Improve reinit behavior from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 9:40 AM · Request for Discussion, MITK (v2023.04)
kalali edited projects for T27613: Improve reinit behavior, added: MITK (v2023.04), Request for Discussion; removed Next Milestone, MITK.
Nov 30 2022, 9:40 AM · Request for Discussion, MITK (v2023.04)
kalali moved T29140: [Selection widget] Optional selection can not be removed if a fitting node is always found from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 9:34 AM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kalali edited projects for T29140: [Selection widget] Optional selection can not be removed if a fitting node is always found, added: MITK (v2023.04); removed Next Milestone, MITK.
Nov 30 2022, 9:34 AM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kalali moved T29402: [mxn multi widget] Concept for blocking individual render windows from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 9:33 AM · MITK (v2023.04)
kalali edited projects for T29402: [mxn multi widget] Concept for blocking individual render windows, added: MITK (v2023.04); removed MITK.
Nov 30 2022, 9:33 AM · MITK (v2023.04)
kalali moved T29362: [mxn multi widget] Plane suggestion of QmitkSlicesInterpolator does not work correctly from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 9:31 AM · Request for Discussion, MITK (v2023.04)
kalali edited projects for T29362: [mxn multi widget] Plane suggestion of QmitkSlicesInterpolator does not work correctly, added: MITK (v2023.04), Request for Discussion; removed Next Milestone, MITK.
Nov 30 2022, 9:31 AM · Request for Discussion, MITK (v2023.04)
kalali moved T27809: [Segmentation Utilities] "Labels" tabs in operations of Utilities view is empty from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 9:30 AM · MITK (v2023.12), Request for Discussion
kalali edited projects for T27809: [Segmentation Utilities] "Labels" tabs in operations of Utilities view is empty, added: MITK (v2023.04); removed MITK, Next Milestone.
Nov 30 2022, 9:30 AM · MITK (v2023.12), Request for Discussion
kalali moved T29381: Move Multilabel classes to Core module from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 9:29 AM · MITK, Request for Discussion
kalali edited projects for T29381: Move Multilabel classes to Core module, added: MITK (v2023.04); removed Next Milestone, MITK.
Nov 30 2022, 9:29 AM · MITK, Request for Discussion
kalali moved T29090: [3D Segmentation] Threshold tool preview draws contours in green and not in the active label color. from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 9:24 AM · MITK (v2024.12), Request for Discussion, Checklist
kalali moved T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from Backlog to In candidates on the MITK (v2023.04) board.
Nov 30 2022, 9:24 AM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Request for Discussion
kalali edited projects for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary", added: MITK (v2023.04); removed Next Milestone, MITK.
Nov 30 2022, 9:24 AM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Request for Discussion
a178n moved T29294: Extend &/or Test nnUnet(v2) on Windows from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 30 2022, 9:21 AM · MITK (v2023.12), Request for Discussion
a178n edited projects for T29294: Extend &/or Test nnUnet(v2) on Windows , added: MITK (v2023.04); removed MITK, Next Milestone.
Nov 30 2022, 9:16 AM · MITK (v2023.12), Request for Discussion
floca moved T29412: List of MITK publications on web page is not up to date from Backlog to MITK Meeting on the Request for Discussion board.
Nov 30 2022, 9:13 AM · MITK
kalali closed T28989: [Segmentation] CanHandle functions seem to be inconsistent as Resolved.
Nov 30 2022, 9:08 AM · MITK, Request for Discussion

Nov 29 2022

s434n moved T28800: [Segmentation] Threshold tool updates after each digit if typed in manually from In candidates to Segmentation on the MITK (v2023.04) board.
Nov 29 2022, 1:38 PM · MITK (v2023.12), Checklist, Request for Discussion
s434n moved T28800: [Segmentation] Threshold tool updates after each digit if typed in manually from Backlog to In candidates on the MITK (v2023.04) board.
Nov 29 2022, 1:38 PM · MITK (v2023.12), Checklist, Request for Discussion
s434n moved T16132: Allow segmentation with several images from Backlog to In candidates on the MITK (v2023.04) board.
Nov 29 2022, 1:34 PM · MITK (v2023.04), Request for Discussion, Bugzilla

Nov 28 2022

floca added a comment to T27189: REST API for data storage.

OK. Thanks for the clarification.

Nov 28 2022, 9:31 AM · Moved to git.dkfz.de, MITK (v2024.12), Restricted Project, Request for Discussion

Nov 25 2022

kislinsk added a revision to T29025: Preference service (access) based on cpp microservices: Restricted Differential Revision.
Nov 25 2022, 10:44 PM · MITK (v2023.04), Breaking Change
gaoh added a comment to T27189: REST API for data storage.

So the last changes in the branch, are basically the changes I made, so that she could modify the code, already used for the dicomweb/kaapana interaction, to simply apply it for this modul. Since it would have been quite similar. I guess, when the changes of the rest module are done: We (AIH-Cluster will take care of restarting the MITK-Kaapana interaction). I think this could be then a not so complicated add-on.

Nov 25 2022, 12:16 PM · Moved to git.dkfz.de, MITK (v2024.12), Restricted Project, Request for Discussion
gaoh added a comment to T27189: REST API for data storage.

Oh yes, I also forgot about this, the final state was, as I remember correctly, that she did not succeed in producing meaningful results.

Nov 25 2022, 12:12 PM · Moved to git.dkfz.de, MITK (v2024.12), Restricted Project, Request for Discussion
floca moved T27189: REST API for data storage from Backlog to In candidates on the MITK (v2023.04) board.
Nov 25 2022, 11:28 AM · Moved to git.dkfz.de, MITK (v2024.12), Restricted Project, Request for Discussion
floca edited projects for T27189: REST API for data storage, added: MITK (v2023.04); removed MITK, Next Milestone.
Nov 25 2022, 11:27 AM · Moved to git.dkfz.de, MITK (v2024.12), Restricted Project, Request for Discussion
floca added a comment to T27189: REST API for data storage.

@gaoh Please help me out. what was the final status of Elisabth's work here? Totaly dropped off the radar.

Nov 25 2022, 11:27 AM · Moved to git.dkfz.de, MITK (v2024.12), Restricted Project, Request for Discussion
floca added a parent task for T29389: Python utility module: T29390: How to ease the handling of external generated segmentations.
Nov 25 2022, 11:17 AM · Moved to git.dkfz.de, MITK (v2024.12)
floca added a subtask for T29390: How to ease the handling of external generated segmentations: T29389: Python utility module.
Nov 25 2022, 11:17 AM · MITK (v2024.06)
floca moved T29390: How to ease the handling of external generated segmentations from Backlog to In candidates on the MITK (v2023.04) board.
Nov 25 2022, 11:15 AM · MITK (v2024.06)
floca edited projects for T29390: How to ease the handling of external generated segmentations, added: MITK (v2023.04); removed MITK.
Nov 25 2022, 11:14 AM · MITK (v2024.06)
floca added a comment to T29390: How to ease the handling of external generated segmentations.

this is also partially covered/related with T29392: [SEG] Add dedicated writer to store multi-label images in nifti

Nov 25 2022, 11:14 AM · MITK (v2024.06)

Nov 24 2022

kislinsk added a comment to T29025: Preference service (access) based on cpp microservices.

Pushed new branch to rMITK MITK: feature/T29025-PreferencesCoreService.

Nov 24 2022, 4:55 PM · MITK (v2023.04), Breaking Change
floca moved T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 24 2022, 2:36 PM · MITK (v2023.12), Request for Discussion
floca moved T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 24 2022, 2:36 PM · MITK (v2024.06)
floca moved T28785: Levelwindow UX proposals/comments from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 24 2022, 2:03 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Missing Info, Request for Discussion
floca moved T29168: [Multilabel Segmentation] Definition and usage of masking and maskstamping from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 24 2022, 1:56 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca moved T29197: [Segmentation] Is the classificationsegmentation-plugin used / required? from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 24 2022, 12:12 PM · MITK (v2024.06)
floca added a project to T29197: [Segmentation] Is the classificationsegmentation-plugin used / required?: Request for Discussion.
Nov 24 2022, 12:12 PM · MITK (v2024.06)
floca moved T29204: [SEG] Rework properties of Label class + add instance information from Backlog to Segmentation on the MITK (v2023.04) board.
Nov 24 2022, 12:11 PM · Moved to git.dkfz.de, MITK (v2024.12), Breaking Change
kalali removed a subtask for T29210: Clarify / remove axis-labeling for anatomical planes: T29211: Remove "Scaling" from QmitkRegistrationManipulationWidget.ui.
Nov 24 2022, 10:44 AM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kalali removed a parent task for T29210: Clarify / remove axis-labeling for anatomical planes: T26543: Enum for AXIAL, SAGITTAL, CORONAL 3D/ORIGINAL/NONE is provided at many different locations.
Nov 24 2022, 10:44 AM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion

Nov 23 2022

floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Backlog to Cycle on the MITK (v2023.04) board.
Nov 23 2022, 3:55 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca moved T29067: Introduce option to save the segmentation in the nnUNet tool GUI itself. from Backlog to Cycle on the MITK (v2023.04) board.
Nov 23 2022, 3:55 PM · MITK

Nov 22 2022

franza triaged T29412: List of MITK publications on web page is not up to date as High priority.
Nov 22 2022, 11:56 AM · MITK

Nov 19 2022

floca added a project to T26543: Enum for AXIAL, SAGITTAL, CORONAL 3D/ORIGINAL/NONE is provided at many different locations: Noteworthy.

@kalali please indicate that it has breaking changes in your commit message and how to handle them/migrate. thanks.

Nov 19 2022, 8:11 PM · Breaking Change, Noteworthy, MITK

Nov 18 2022

kalali raised the priority of T26543: Enum for AXIAL, SAGITTAL, CORONAL 3D/ORIGINAL/NONE is provided at many different locations from Low to Normal.
Nov 18 2022, 12:32 PM · Breaking Change, Noteworthy, MITK
kalali added a subtask for T29403: [mxn multi widget] Concept for crosshair data type: T29386: [mxn multi widget] StdDisplay unnecessarily uses the crosshair manager.
Nov 18 2022, 12:26 PM · MITK (v2023.04)
kalali triaged T29403: [mxn multi widget] Concept for crosshair data type as Normal priority.
Nov 18 2022, 12:26 PM · MITK (v2023.04)
kalali added a subtask for T29402: [mxn multi widget] Concept for blocking individual render windows: T29335: [Segmentation] Show interactive warning for uninitialized render window geometry.
Nov 18 2022, 11:32 AM · MITK (v2023.04)