Due to the refactoring of the (MultiLabel) Segmentation modules / plugin views we postponed this again. We need the functionality to explicitly address specific labels of a label set image so that we can compute the center of mass of a specific label.
Also, in the long run we don't want to rely on the data manager / context menu to select the current segmentation / jump to the current segmentation but rather provide additional possibilities (e.g. inside other plugin views) to focus the camera view to a segmentation mask.

Jul 15 2021, 1:47 PM · MITK (v2023.04), Bugzilla

Jul 14 2021

kislinsk lowered the priority of T16153: [Segmentation] Jump to center of mass of segmentation on click from Normal to Wishlist.

Jul 14 2021, 11:31 AM · MITK (v2023.04), Bugzilla

Jun 22 2021

kalali added a project to T16153: [Segmentation] Jump to center of mass of segmentation on click: Request for Discussion.

Jun 22 2021, 1:04 PM · MITK (v2023.04), Bugzilla

kalali moved T16153: [Segmentation] Jump to center of mass of segmentation on click from Backlog to Segmentation on the MITK (v2021.10) board.

Jun 22 2021, 1:04 PM · MITK (v2023.04), Bugzilla

kalali renamed T16153: [Segmentation] Jump to center of mass of segmentation on click from Jump to center of mass of segmentation on click to [Segmentation] Jump to center of mass of segmentation on click.

Jun 22 2021, 1:04 PM · MITK (v2023.04), Bugzilla

Jun 4 2021

floca added a subtask for T8140: Reimplement volume annotations for segmentations: T28524: Refactor LabelSetImage and associated classes..

Jun 4 2021, 7:11 PM · MITK (v2024.06), Request for Discussion, Bugzilla

Apr 9 2021

floca moved T8140: Reimplement volume annotations for segmentations from Backlog to Segmentation on the MITK (v2021.10) board.

Apr 9 2021, 6:18 PM · MITK (v2024.06), Request for Discussion, Bugzilla

floca edited projects for T8140: Reimplement volume annotations for segmentations, added: Request for Discussion, MITK (v2021.10); removed Next Milestone, MITK.

Apr 9 2021, 6:18 PM · MITK (v2024.06), Request for Discussion, Bugzilla

Apr 7 2021

floca moved T18014: write tool interaction tests for segmentation from Backlog to Tests/Checklists on the MITK (v2021.10) board.

Apr 7 2021, 9:45 PM · MITK (v2024.06), Bugzilla

kalali edited projects for T18014: write tool interaction tests for segmentation, added: MITK (v2021.10); removed Next Milestone, MITK.

Apr 7 2021, 11:11 AM · MITK (v2024.06), Bugzilla

Mar 10 2021

kislinsk edited projects for T18014: write tool interaction tests for segmentation, added: MITK, Next Milestone; removed MITK (v2021.02).

Mar 10 2021, 9:09 AM · MITK (v2024.06), Bugzilla

kislinsk closed T11900: ExtApp fails to load DICOM files if filename starts with a dot as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:02 AM · Auto-closed, Missing Info, MITK, Bugzilla

kislinsk closed T15551: Tutorial Step 6: region growing does not display results as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:02 AM · Auto-closed, MITK (v2021.02), Missing Info, Bugzilla

kislinsk closed T19449: Render window not updated on non-auto-topmost data node selection. as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, Bugzilla, MITK

Feb 3 2021

kalali edited projects for T19522: Segmentation not displayed in 3d-render window, added: MITK; removed Request for Discussion, MITK (v2021.02).

Feb 3 2021, 2:17 PM · MITK, Bugzilla

kalali changed the status of T19522: Segmentation not displayed in 3d-render window from Resolved to Invalid.

Feb 3 2021, 2:17 PM · MITK, Bugzilla

kalali closed T19522: Segmentation not displayed in 3d-render window as Resolved.

We discussed this and decided to open a new task to cleanly define the problem. We thought that this task mixes many different things without stating the minimal steps to reproduce a single problem, so please continue here: T28270

Feb 3 2021, 2:16 PM · MITK, Bugzilla

kalali added a comment to T19522: Segmentation not displayed in 3d-render window.

I don't mind, I'm not planing to fix this before the release, so if you have time. I'm testing this with the develop branch and comparing it with the MITK 2018 installer.

Feb 3 2021, 12:58 PM · MITK, Bugzilla

kislinsk added a comment to T19522: Segmentation not displayed in 3d-render window.

Beware of a few things. T28211: [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers) also fixed rendering of image slices in 3-d, so I suggest to use the latest release branch to test anything related instead of the snapshot installers.

Feb 3 2021, 12:53 PM · MITK, Bugzilla

Feb 2 2021

kalali added a project to T19522: Segmentation not displayed in 3d-render window: Request for Discussion.

In T19522#68902, @goch wrote:

Specifically it is not visible on the 2D planes in the 3D render window, this error is unrelated to volume rendering.

Feb 2 2021, 12:51 PM · MITK, Bugzilla

Jan 19 2021

kalali closed T18967: Segmentation warnings replace each other as Invalid.

The new selection concept automatically removes non-matching segmentation nodes if the reference image was changed. A warning is shown Select or create a segmentation (Tools disabled)
The new selection concept does not allow to select a non-matching segmentation node
Selecting a matching segmentation node that is invisible results in the warning: The selected segmentation is currently not visible! (Tools disabled)
Showing the invisible segmentation node results in the warning: Please perform a reinit on the segmentation image! (Tools disabled)
Performing a reinit on the matching segmentation node enables the tools (no warning shown)

Jan 19 2021, 2:35 PM · MITK, Bugzilla

kalali claimed T18967: Segmentation warnings replace each other.

We are now using a different approach but this should be verified with the new widgets.

Jan 19 2021, 12:40 PM · MITK, Bugzilla

Jan 2 2021

kalali moved T19522: Segmentation not displayed in 3d-render window from Backlog to Segmentation on the MITK (v2021.02) board.

Jan 2 2021, 2:03 PM · MITK, Bugzilla

kalali edited projects for T19522: Segmentation not displayed in 3d-render window, added: MITK (v2021.02); removed MITK.

Jan 2 2021, 2:03 PM · MITK, Bugzilla

Nov 11 2020

kislinsk closed T17915: mitk::Line doesn't compile as Resolved.

The original issue of this task was fixed a long time ago.

Nov 11 2020, 12:34 PM · Bugzilla, MITK

floca added a parent task for T19711: Correct handling of RT-Properties in nodes and data: T23746: MITK and DICOM (realization).

Nov 11 2020, 11:34 AM · Bugzilla, MITK

floca reopened T19711: Correct handling of RT-Properties in nodes and data as "Open".

Nov 11 2020, 11:33 AM · Bugzilla, MITK

kislinsk closed T19711: Correct handling of RT-Properties in nodes and data as Wontfix.

Hi there! 🙂

Nov 11 2020, 10:54 AM · Bugzilla, MITK

kislinsk closed T14956: Can't use MeshUtil<MeshType>::MeshFromPolyData as Wontfix.

Hi there! 🙂

Nov 11 2020, 10:54 AM · Auto-closed, Bugzilla, MITK

Oct 26 2020

kalali reopened T17656: ProgressBar for morphological operations as "Open".

I just stumbled upon this while testing the utilities with 4D data. Depending on the number of timesteps and the complexity of the operation the selected operation might take a while (you ca actually see the progress in the console output).
This should be discussed as I do not see any

whole new segmentation functionality this year

Oct 26 2020, 11:21 AM · Auto-closed, Request for Discussion, MITK, Bugzilla

Oct 23 2020

kompan added a comment to T8140: Reimplement volume annotations for segmentations.

This tasks came up again in the discussion of the clipping plane plugin, which allows for volume annotations for segmentations. Since we decided to remove the clipping plane plugin from the MITK release, this task was tagged with "Next Milestone" in order to restore the useful feature of volume annotations also outside the clipping plane plugin.

Oct 23 2020, 12:09 PM · MITK (v2024.06), Request for Discussion, Bugzilla

kislinsk renamed T8140: Reimplement volume annotations for segmentations from Implement volume annotation for ImageVtkMapper2D to Reimplement volume annotations for segmentations.

Oct 23 2020, 11:44 AM · MITK (v2024.06), Request for Discussion, Bugzilla

kislinsk removed a project from T8140: Reimplement volume annotations for segmentations: Request for Discussion.

Oct 23 2020, 11:43 AM · MITK (v2024.06), Request for Discussion, Bugzilla

Sep 30 2020

kalali moved T18014: write tool interaction tests for segmentation from Backlog to Segmentation on the MITK (v2021.02) board.

Sep 30 2020, 1:18 PM · MITK (v2024.06), Bugzilla

kalali edited projects for T18014: write tool interaction tests for segmentation, added: MITK (v2021.02); removed MITK.

mitkToolInteractionTestSuite in mitkToolInteractionTest.cpp does not contain any tests (all disabled)

Sep 30 2020, 1:18 PM · MITK (v2024.06), Bugzilla

Sep 25 2020

kompan added a project to T8140: Reimplement volume annotations for segmentations: Request for Discussion.

Sep 25 2020, 11:34 AM · MITK (v2024.06), Request for Discussion, Bugzilla

kislinsk placed T8140: Reimplement volume annotations for segmentations up for grabs.

Sep 25 2020, 11:33 AM · MITK (v2024.06), Request for Discussion, Bugzilla

kompan reopened T8140: Reimplement volume annotations for segmentations as "Open".

Sep 25 2020, 11:33 AM · MITK (v2024.06), Request for Discussion, Bugzilla

kompan added a project to T8140: Reimplement volume annotations for segmentations: Next Milestone.

Sep 25 2020, 11:32 AM · MITK (v2024.06), Request for Discussion, Bugzilla

Sep 22 2020

kislinsk closed T19407: Basic image processing fixes as Wontfix.

Hi there! 🙂

Sep 22 2020, 7:09 AM · Auto-closed, Request for Discussion, Bugzilla, MITK

Sep 10 2020

kislinsk closed T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental) as Wontfix.

Sep 10 2020, 10:32 AM · Bugzilla, MITK

kislinsk closed T19724: Feature processor for classification as Wontfix.

Sep 10 2020, 10:31 AM · Bugzilla, MITK

kislinsk closed T19814: Add 4D support to PlanarFigures as Wontfix.

Sep 10 2020, 10:30 AM · MITK, Bugzilla

kislinsk closed T19831: Create a bunch of common and often used miniapps such as converter, 4D extractor as Resolved.

Meanwhile another cmdline app for extracting time steps was written.

Sep 10 2020, 10:30 AM · Bugzilla, MITK

kislinsk added a comment to T19828: Improve dynamic-analysis module.

Deleted branch T19828-dynamic-analysis-improvements-snapshot.

Sep 10 2020, 10:23 AM · Auto-closed, Bugzilla, MITK

kislinsk added a comment to T10304: NavigationDataPlayer should support tool storages.

Deleted branch T10304-NavigationDataPlayerAsTrackingDevice_2017_01.

Sep 10 2020, 10:23 AM · Bugzilla, MITK

kislinsk closed T19256: Enhances SegmentationUtilities for PlanarFigure to BinaryImage as Wontfix.

Sep 10 2020, 10:21 AM · MITK, Bugzilla

kislinsk added a comment to T19831: Create a bunch of common and often used miniapps such as converter, 4D extractor.

Deleted branch T19831-CommonMiniApps.

Sep 10 2020, 10:00 AM · Bugzilla, MITK

kislinsk added a comment to T19830: Rendering timegeometry does not match image timegeometry.

Deleted branch T19830-fixing-rendering-of-arbitraryTimeGeometries-snapshot.

Sep 10 2020, 9:58 AM · Bugzilla, MITK

kislinsk added a comment to T19830: Rendering timegeometry does not match image timegeometry.

Deleted branch T19830-fix-rendering-of-arbitrary-TimeGeometries-master.

Sep 10 2020, 9:58 AM · Bugzilla, MITK

kislinsk added a comment to T19814: Add 4D support to PlanarFigures.

Deleted branch T19814-4d-planarfigures-master.

Sep 10 2020, 9:58 AM · MITK, Bugzilla

kislinsk added a comment to T19473: Incorrect time bounds with 3D+t images which only differ in TriggerTime.

Deleted branch T19473-consider-triggertime-in-DICOM-loading-rebased.

Sep 10 2020, 9:58 AM · Bugzilla, MITK

kislinsk added a comment to T19814: Add 4D support to PlanarFigures.

Deleted branch T19814-4d-planarfigures-master2.

Sep 10 2020, 9:58 AM · MITK, Bugzilla

kislinsk added a comment to T19814: Add 4D support to PlanarFigures.

Deleted branch T19814-4d-planarfigures-master-rebased.

Sep 10 2020, 9:58 AM · MITK, Bugzilla

kislinsk added a comment to T19473: Incorrect time bounds with 3D+t images which only differ in TriggerTime.

Deleted branch T19473-consider-triggertime-in-DICOM-loading.

Sep 10 2020, 9:58 AM · Bugzilla, MITK

kislinsk added a comment to T19724: Feature processor for classification.

Deleted branch T19724-usBasedFeatureProcessing.

Sep 10 2020, 9:56 AM · Bugzilla, MITK

kislinsk added a comment to T19784: VTK 7 & Qt5.6 OpenGL Rendering conflict on OSX 10.11.

Deleted branch T19784-AddQtAAEnableHighDpiScaling.

Sep 10 2020, 9:56 AM · MITK, Bugzilla

kislinsk added a comment to T19168: Classification based segmentation plugin with focus on intracerebral hemorrhages in CT images (experimental).

Deleted branch T19168-CleanPluginIntegration.

Sep 10 2020, 9:56 AM · Bugzilla, MITK

kislinsk added a comment to T19736: Rewrite IGT and Navigation module documentation.

Deleted branch T19736-NavigationModuleDocumentation_2016_09.

Sep 10 2020, 9:52 AM · Bugzilla, MITK

kislinsk added a comment to T18881: IGTTimeStamp is not in milliseconds.

Deleted branch T18881-FixIGTTimeStampAndReaderWriter.

Sep 10 2020, 9:52 AM · MITK, Bugzilla

kislinsk added a comment to T19609: platform project: New ImageStatistics Module.

Deleted branch T19609-integration-branch.

Sep 10 2020, 9:52 AM · MITK (2016-11), Bugzilla

kislinsk added a comment to T10304: NavigationDataPlayer should support tool storages.

Deleted branch T10304-NavigationDataPlayerAsTrackingDevice.

Sep 10 2020, 9:52 AM · Bugzilla, MITK

kislinsk added a comment to T18520: Geometry CleanUp Reloaded.

Deleted branch T18520-ConstCorrectForGeometries.

Sep 10 2020, 9:52 AM · Bugzilla, MITK

kislinsk added a comment to T19786: Overlay Layouter concept changes.

Deleted branch T19786-ImplementOverlayLayouterAsServiceStyleRebase.

Sep 10 2020, 9:47 AM · Bugzilla, MITK

kislinsk added a comment to T19786: Overlay Layouter concept changes.

Deleted branch T19786-ImplementOverlayLayouterAsServiceRebaseNov.

Sep 10 2020, 9:47 AM · Bugzilla, MITK

kislinsk added a comment to T19786: Overlay Layouter concept changes.

Deleted branch T19786-DICOMAnnotationDemo.

Sep 10 2020, 9:47 AM · Bugzilla, MITK

kislinsk added a comment to T19786: Overlay Layouter concept changes.

Deleted branch T19786-ImplementOverlayLayouterAsOverlayManagerReplacement.

Sep 10 2020, 9:47 AM · Bugzilla, MITK

kislinsk added a comment to T18922: Change VTK rendering backend to OpenGL2.

Deleted branch T18922-OpenGLBackendRebase2.

Sep 10 2020, 9:47 AM · Bugzilla, MITK

kislinsk added a comment to T18922: Change VTK rendering backend to OpenGL2.

Deleted branch T18922-OpenGLBackendRebase.

Sep 10 2020, 9:47 AM · Bugzilla, MITK

kislinsk added a comment to T19360: Compatibility with old scene files broken (Surface line width redefined from int to float).

Deleted branch T19360-legacy-scene-surface-line-width-incompatible.

Sep 10 2020, 9:46 AM · Pull Request, Bugzilla, MITK

kislinsk added a comment to T19801: MITK crashes when deleting planar figure with "Delete" key.

Deleted branch T19801-planar-figure-interactor-crash.

Sep 10 2020, 9:46 AM · MITK (2016-11), Bugzilla

Sep 1 2020

kislinsk closed T19011: DICOM Browser: Scanning empty directory causes Import dialog to stay open forever as Wontfix.

Hi there! 🙂

Sep 1 2020, 4:46 PM · Auto-closed, MITK, Bugzilla

Aug 26 2020

floca closed T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images as Resolved by committing rMITK290e64ed3d0a: Corrected and refactored FastMarching3DTool..

Aug 26 2020, 11:23 AM · MITK (v2021.02), Bugzilla

kalali added a comment to T16026: Distinct tool names for 2d and 3d segmentation tools.

Is this still a topic?

Aug 26 2020, 10:01 AM · MITK, Bugzilla

Aug 21 2020

• thomass added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Crash fixed by D380 :)

Aug 21 2020, 2:17 PM · MITK (v2021.02), Bugzilla

Aug 7 2020

floca added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

In T18436#208159, @thomass wrote:

Oh I didn’t look into the Differential yet, only tried it with the current develop. The crash I observed in with FastMarching3D

Aug 7 2020, 8:51 PM · MITK (v2021.02), Bugzilla

• thomass added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Oh I didn’t look into the Differential yet, only tried it with the current develop. The crash I observed in with FastMarching3D

Aug 7 2020, 8:49 PM · MITK (v2021.02), Bugzilla

floca added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Did you experience the error based on the Differential? Did you open FastMarching for 2D or 3D?

Aug 7 2020, 8:43 PM · MITK (v2021.02), Bugzilla

• thomass added a comment to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

I also experience a crash in the tool:

Aug 7 2020, 1:12 PM · MITK (v2021.02), Bugzilla

Aug 6 2020

floca added a revision to T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images: Restricted Differential Revision.

Aug 6 2020, 9:08 PM · MITK (v2021.02), Bugzilla

Aug 4 2020

floca claimed T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Aug 4 2020, 8:56 PM · MITK (v2021.02), Bugzilla

floca moved T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images from Backlog to Segmentation on the MITK (v2021.02) board.

Aug 4 2020, 8:45 PM · MITK (v2021.02), Bugzilla

floca raised the priority of T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images from Normal to High.

Aug 4 2020, 8:45 PM · MITK (v2021.02), Bugzilla

Jul 29 2020

kalali renamed T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images from Fast Marching 3D Tool only supported for first time step in 4D images to [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.

Jul 29 2020, 2:09 PM · MITK (v2021.02), Bugzilla

kalali reopened T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images as "Open".

Jul 29 2020, 2:09 PM · MITK (v2021.02), Bugzilla

kalali added a parent task for T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images: T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

Jul 29 2020, 2:05 PM · MITK (v2021.02), Bugzilla