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Jan 27 2021

eisenman committed rCHALLENGER0a860ed53187: Bump version number (authored by eisenman).
Bump version number
Jan 27 2021, 7:02 PM
eisenman added a comment to T28194: drop restriction at least 3 algorithms required for bootstrapping.

This issue will be fixed in v1.0.1.

Jan 27 2021, 6:49 PM · challengeR
kalali added a comment to T28191: Refactor and extend LevelWindow unit tests.

Most of the functions that can be called from the QmitkLevelWindowWidget (meaning the slider, the line edit and the contextmenu) are covered in mitkLevelWindowTest.
However, the LevelWindowManager tests where outdated and suboptimal, so I opened T28204.

Jan 27 2021, 6:40 PM · Auto-closed, MITK
kalali updated the task description for T28204: Refactor LevelWindowManagerTest.
Jan 27 2021, 6:36 PM · MITK (v2021.10)
eisenman moved T28227: challangeR Patch v1.0.1 from Backlog to In Progress on the challengeR board.
Jan 27 2021, 6:29 PM · challengeR
eisenman triaged T28227: challangeR Patch v1.0.1 as High priority.
Jan 27 2021, 6:29 PM · challengeR
kalali added a subtask for T28108: [Release Checklists] Prepare release checklists: Unknown Object (Maniphest Task).
Jan 27 2021, 6:27 PM · MITK
kalali added a subtask for T28108: [Release Checklists] Prepare release checklists: Unknown Object (Maniphest Task).
Jan 27 2021, 6:26 PM · MITK
eisenman moved T28210: update citation of paper to scientific reports from In Progress to Done on the challengeR board.
Jan 27 2021, 6:22 PM · challengeR
eisenman committed rCHALLENGER59053e5b0b24: Merge branch 'feature/T28210-UpdateCitation' into develop (authored by eisenman).
Merge branch 'feature/T28210-UpdateCitation' into develop
Jan 27 2021, 6:21 PM
kalali added a comment to T28203: [Segmentation] 2-d correction tool does not work anymore and should be removed.

Is this obsolete know with the discussion results stated in D459?

Jan 27 2021, 6:21 PM · MITK (v2021.02)
eisenman committed rCHALLENGER7abba0882e24: Update citation (authored by eisenman).
Update citation
Jan 27 2021, 6:20 PM
kalali closed T27498: [Selection widgets] Define default for auto selection / listening mechanism as Resolved.
Jan 27 2021, 6:08 PM · Restricted Project, MITK (v2021.02)
kalali triaged T28226: [Selection concept] Activate auto selection mode per default for the data selection widgets as Normal priority.
Jan 27 2021, 6:07 PM · MITK (v2021.10)
kislinsk updated the task description for T28000: MITK v2021.02.
Jan 27 2021, 5:59 PM · MITK-ProjectTemplate, MITK (v2021.02)
kalali moved T27571: Multilabel segmentation does not work with US DICOM images from Backlog to Segmentation on the MITK (v2021.02) board.
Jan 27 2021, 5:59 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali moved T27883: [Segmentation] Crash and interpolation issues in static segmentation on reference image with strange arbitrary time geometry (3d+t heart) from Backlog to Segmentation on the MITK (v2021.02) board.
Jan 27 2021, 5:58 PM · MITK (v2021.02)
kalali moved T28138: [MultiLabel Segmentation] Add tests for the LabelSetImage from Backlog to Segmentation on the MITK (v2021.02) board.
Jan 27 2021, 5:57 PM · MITK (v2022.10)
kalali moved T28223: [ImageStatistics] Deleting a datanode after statistics leads to no histogram update for the next node from Backlog to MaaS on the MITK (v2021.02) board.
Jan 27 2021, 5:57 PM · Next Milestone, MITK
kislinsk closed T28216: Shortlinks in Windows installer for command-line apps on Windows use START command, a subtask of T28000: MITK v2021.02, as Resolved.
Jan 27 2021, 5:57 PM · MITK-ProjectTemplate, MITK (v2021.02)
kalali moved T28222: [ImageStatistics] Histogram is only shown for timestep 0 from Backlog to MaaS on the MITK (v2021.02) board.
Jan 27 2021, 5:57 PM · MITK (v2021.02)
kislinsk closed T28216: Shortlinks in Windows installer for command-line apps on Windows use START command as Resolved.
Jan 27 2021, 5:57 PM · MITK (v2021.02)
kalali moved T28221: [ImageStatistics] Histogram is not updated when using ROI from Backlog to MaaS on the MITK (v2021.02) board.
Jan 27 2021, 5:57 PM · MITK (v2021.02)
kalali moved T28203: [Segmentation] 2-d correction tool does not work anymore and should be removed from Backlog to Segmentation on the MITK (v2021.02) board.
Jan 27 2021, 5:56 PM · MITK (v2021.02)
kalali moved T28218: [Segmentation] The text in the "Create a static mask?" message box is way to technical from Backlog to Segmentation on the MITK (v2021.02) board.
Jan 27 2021, 5:56 PM · MITK (v2021.02)
floca added a revision to T28225: [Segmentation] SegTool2D::WritePreviewOnWorkingImage does not work correctly: Unknown Object (Differential Revision).
Jan 27 2021, 5:51 PM · MITK
floca renamed T28225: [Segmentation] SegTool2D::WritePreviewOnWorkingImage does not work correctly from [Segmentation] SegTol2D::WritePreviewOnWorkingImage does not work correctly to [Segmentation] SegTool2D::WritePreviewOnWorkingImage does not work correctly.
Jan 27 2021, 5:34 PM · MITK
eisenman added a comment to T28210: update citation of paper to scientific reports.

An update is also required in report.Rmd, visualizations.Rmd and CITATION.

Jan 27 2021, 5:33 PM · challengeR
floca triaged T28225: [Segmentation] SegTool2D::WritePreviewOnWorkingImage does not work correctly as Normal priority.
Jan 27 2021, 5:33 PM · MITK
eisenman claimed T28210: update citation of paper to scientific reports.

This issue will be fixed in v1.0.1.

Jan 27 2021, 5:25 PM · challengeR
eisenman moved T28202: Error in stabilityByAlgorithm if only one case is used from In Progress to Done on the challengeR board.

This issue will be fixed in v1.0.1.

Jan 27 2021, 5:22 PM · challengeR
eisenman added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.

Seems fine!

Jan 27 2021, 5:21 PM · challengeR
kahl triaged T28224: [Point Set] List of points is not shown if plugin opened after data loading as Normal priority.
Jan 27 2021, 3:51 PM · MITK (v2021.02)
kislinsk added a comment to T28222: [ImageStatistics] Histogram is only shown for timestep 0.

Ralf estimates that it takes a long time to fix this so we may come up with intermediate solutions or state in the UI that only 3d images are supported.

Jan 27 2021, 3:46 PM · MITK (v2021.02)
• thomass added a parent task for T28219: [Image Cropper] Selection widget does not allow to create a new bounding box: T28000: MITK v2021.02.
Jan 27 2021, 3:45 PM · MITK (v2021.02)
• thomass added a subtask for T28000: MITK v2021.02: T28219: [Image Cropper] Selection widget does not allow to create a new bounding box.
Jan 27 2021, 3:45 PM · MITK-ProjectTemplate, MITK (v2021.02)
eisenman moved T28193: bug in stabilityByAlgorithm.bootstrap.list from In Progress to Done on the challengeR board.

This issue will be fixed in v1.0.1.

Jan 27 2021, 3:37 PM · challengeR
kislinsk added a comment to T28217: [MatchPoint] Registrations generated with manipulator have no proper PropertyReleations.

This is not high priority. Fix other release bugs before, please. :-)

Jan 27 2021, 3:36 PM · Moved to git.dkfz.de, MITK (v2024.12)
eisenman committed rCHALLENGER06191a233e37: Merge branch 'feature/T28193-UnitTestsMoreTasksThanAlgorithms' into develop (authored by eisenman).
Merge branch 'feature/T28193-UnitTestsMoreTasksThanAlgorithms' into develop
Jan 27 2021, 3:33 PM
kislinsk removed a subtask for T28000: MITK v2021.02: T28215: [Volume Visualization] Computation types Avg and Max have huge differences between CPU and GPU.
Jan 27 2021, 3:32 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk removed a parent task for T28215: [Volume Visualization] Computation types Avg and Max have huge differences between CPU and GPU: T28000: MITK v2021.02.
Jan 27 2021, 3:32 PM · MITK
kislinsk edited projects for T28215: [Volume Visualization] Computation types Avg and Max have huge differences between CPU and GPU, added: MITK; removed MITK (v2021.02).
Jan 27 2021, 3:32 PM · MITK
kislinsk removed a parent task for T28209: [MatchPoint] Preference setting additional algorithm does not work: T28000: MITK v2021.02.
Jan 27 2021, 3:27 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk removed a subtask for T28000: MITK v2021.02: T28209: [MatchPoint] Preference setting additional algorithm does not work.
Jan 27 2021, 3:27 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk edited projects for T28209: [MatchPoint] Preference setting additional algorithm does not work, added: MITK, Next Milestone; removed MITK (v2021.02).
Jan 27 2021, 3:27 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk edited projects for T28127: Reopen segmentation in MITK, added: MITK (v2021.02), Missing Info; removed Next Milestone, MITK.
Jan 27 2021, 3:25 PM · MITK (v2021.02), Restricted Project, Kaapana (internal)
kislinsk lowered the priority of T28127: Reopen segmentation in MITK from Unbreak Now! to Normal.

We're waiting for a fix of https://github.com/QIICR/dcmqi/issues/414 instead of further lowering precision in checks.

Jan 27 2021, 3:25 PM · MITK (v2021.02), Restricted Project, Kaapana (internal)
kislinsk removed a subtask for T28000: MITK v2021.02: T28207: MITK DicomBrowser q/r Retrieve part crash.
Jan 27 2021, 3:18 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk removed a parent task for T28207: MITK DicomBrowser q/r Retrieve part crash: T28000: MITK v2021.02.
Jan 27 2021, 3:18 PM · MITK, Checklist
kislinsk raised the priority of T28207: MITK DicomBrowser q/r Retrieve part crash from Normal to High.
Jan 27 2021, 3:18 PM · MITK, Checklist
kislinsk added a comment to T28206: [Image Statistics] Renaming segmentation or planar figure based ROI nodes breaks histogram.

Similar to T28223: [ImageStatistics] Deleting a datanode after statistics leads to no histogram update for the next node.

Jan 27 2021, 3:16 PM · MITK (v2024.12)
kislinsk removed a parent task for T28205: [View Navigator] View names in do not update their appearance when opened/closed: T28000: MITK v2021.02.
Jan 27 2021, 3:14 PM · Next Milestone, MITK
kislinsk removed a subtask for T28000: MITK v2021.02: T28205: [View Navigator] View names in do not update their appearance when opened/closed.
Jan 27 2021, 3:14 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk edited projects for T28205: [View Navigator] View names in do not update their appearance when opened/closed, added: MITK, Next Milestone; removed MITK (v2021.02).
Jan 27 2021, 3:14 PM · Next Milestone, MITK
• thomass added a comment to T28223: [ImageStatistics] Deleting a datanode after statistics leads to no histogram update for the next node.

probably related to T28206

Jan 27 2021, 3:14 PM · Next Milestone, MITK
kislinsk removed a subtask for T28000: MITK v2021.02: T27578: 2021.1 Linux installer does not work on Fedora.
Jan 27 2021, 3:13 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk removed a parent task for T27578: 2021.1 Linux installer does not work on Fedora: T28000: MITK v2021.02.
Jan 27 2021, 3:13 PM · MITK (v2022.10)
kislinsk edited projects for T27578: 2021.1 Linux installer does not work on Fedora, added: Next Milestone, MITK; removed MITK (v2021.02).
Jan 27 2021, 3:13 PM · MITK (v2022.10)
• thomass added a subtask for T28000: MITK v2021.02: T28220: [Image Cropper] Masking a 4D image and overwrite the original one leads to strange result.
Jan 27 2021, 3:08 PM · MITK-ProjectTemplate, MITK (v2021.02)
• thomass added a parent task for T28220: [Image Cropper] Masking a 4D image and overwrite the original one leads to strange result: T28000: MITK v2021.02.
Jan 27 2021, 3:08 PM · MITK (v2021.02)
• thomass added a parent task for T28221: [ImageStatistics] Histogram is not updated when using ROI: T28000: MITK v2021.02.
Jan 27 2021, 3:07 PM · MITK (v2021.02)
• thomass added a subtask for T28000: MITK v2021.02: T28221: [ImageStatistics] Histogram is not updated when using ROI.
Jan 27 2021, 3:07 PM · MITK-ProjectTemplate, MITK (v2021.02)
• thomass added a subtask for T28000: MITK v2021.02: T28222: [ImageStatistics] Histogram is only shown for timestep 0.
Jan 27 2021, 3:06 PM · MITK-ProjectTemplate, MITK (v2021.02)
• thomass added a parent task for T28222: [ImageStatistics] Histogram is only shown for timestep 0: T28000: MITK v2021.02.
Jan 27 2021, 3:06 PM · MITK (v2021.02)
kislinsk placed T28206: [Image Statistics] Renaming segmentation or planar figure based ROI nodes breaks histogram up for grabs.
Jan 27 2021, 3:06 PM · MITK (v2024.12)
kislinsk placed T28212: [Point Set] Only points for time step 0 are listed up for grabs.
Jan 27 2021, 3:06 PM · MITK (v2021.02)
• thomass added a parent task for T28223: [ImageStatistics] Deleting a datanode after statistics leads to no histogram update for the next node: T28000: MITK v2021.02.
Jan 27 2021, 3:06 PM · Next Milestone, MITK
• thomass added a subtask for T28000: MITK v2021.02: T28223: [ImageStatistics] Deleting a datanode after statistics leads to no histogram update for the next node.
Jan 27 2021, 3:06 PM · MITK-ProjectTemplate, MITK (v2021.02)
• thomass updated the task description for T28223: [ImageStatistics] Deleting a datanode after statistics leads to no histogram update for the next node.
Jan 27 2021, 3:00 PM · Next Milestone, MITK
• thomass triaged T28223: [ImageStatistics] Deleting a datanode after statistics leads to no histogram update for the next node as High priority.
Jan 27 2021, 3:00 PM · Next Milestone, MITK
kislinsk added a comment to T28211: [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers).

It's definitely linked to the crosshair. If you disable the crosshair everything works immediately.

Jan 27 2021, 2:57 PM · MITK (v2021.02)
kislinsk added a comment to T28211: [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers).

Zoom into the image until you have big pixels. Click in a pixel, crosshair snaps to that pixel, color/opacity is not shown. Click on that pixel again and it works. You can also click, hold, and move the cursor. As soon as you move the cursor it works. Stops working as soon as you leave the pixel and the crosshair snaps to the next pixel.

Jan 27 2021, 2:54 PM · MITK (v2021.02)
• thomass triaged T28222: [ImageStatistics] Histogram is only shown for timestep 0 as High priority.
Jan 27 2021, 2:53 PM · MITK (v2021.02)
kislinsk renamed T28211: [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers) from [Image Rendering] Color change/ Opacity strange behaviour to [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers).
Jan 27 2021, 2:46 PM · MITK (v2021.02)
• thomass added a comment to T28221: [ImageStatistics] Histogram is not updated when using ROI.

However, checking "Show Subchart" always invokes an update and then you can see it

Jan 27 2021, 2:42 PM · MITK (v2021.02)
• thomass triaged T28221: [ImageStatistics] Histogram is not updated when using ROI as High priority.
Jan 27 2021, 2:40 PM · MITK (v2021.02)
kislinsk deleted OP 4.1 Phabricator Anleitung.
Jan 27 2021, 2:37 PM
• thomass edited projects for T28219: [Image Cropper] Selection widget does not allow to create a new bounding box, added: MITK (v2021.02); removed MITK.
Jan 27 2021, 2:37 PM · MITK (v2021.02)
• thomass edited projects for T28220: [Image Cropper] Masking a 4D image and overwrite the original one leads to strange result, added: MITK (v2021.02); removed MITK.
Jan 27 2021, 2:36 PM · MITK (v2021.02)
• thomass triaged T28220: [Image Cropper] Masking a 4D image and overwrite the original one leads to strange result as High priority.
Jan 27 2021, 2:34 PM · MITK (v2021.02)
• thomass triaged T28219: [Image Cropper] Selection widget does not allow to create a new bounding box as Unbreak Now! priority.
Jan 27 2021, 2:31 PM · MITK (v2021.02)
kislinsk added a comment to T28211: [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers).

Only happens in Windows installers. How do we debug this?

Jan 27 2021, 2:28 PM · MITK (v2021.02)
kislinsk triaged T28218: [Segmentation] The text in the "Create a static mask?" message box is way to technical as Unbreak Now! priority.
Jan 27 2021, 2:27 PM · MITK (v2021.02)
kislinsk added a comment to T28211: [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers).

It is dependent of the crosshair position. If you do not see anything, carefully move the crosshair around in a 2d window and there is always at least a pixel or region, where the changes are visible. What is going on? 🐛

Jan 27 2021, 2:11 PM · MITK (v2021.02)
kislinsk raised the priority of T28211: [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers) from Normal to Unbreak Now!.

Wow, this is really a blocker. Didn't work in the December snapshot installer neither. Is it specific to installed versions maybe? I will try with a build-tree version...

Jan 27 2021, 2:07 PM · MITK (v2021.02)
floca triaged T28217: [MatchPoint] Registrations generated with manipulator have no proper PropertyReleations as Normal priority.
Jan 27 2021, 2:05 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk triaged T28216: Shortlinks in Windows installer for command-line apps on Windows use START command as Unbreak Now! priority.
Jan 27 2021, 2:02 PM · MITK (v2021.02)
kislinsk removed a project from T28207: MITK DicomBrowser q/r Retrieve part crash: MITK-ProjectTemplate.
Jan 27 2021, 1:46 PM · MITK, Checklist
kislinsk removed a project from T28209: [MatchPoint] Preference setting additional algorithm does not work: MITK-ProjectTemplate.
Jan 27 2021, 1:46 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk removed a project from T28211: [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers): MITK-ProjectTemplate.
Jan 27 2021, 1:45 PM · MITK (v2021.02)
kislinsk removed a project from T28212: [Point Set] Only points for time step 0 are listed: MITK-ProjectTemplate.
Jan 27 2021, 1:45 PM · MITK (v2021.02)
kislinsk removed a project from T28213: [Point Set] Clear current time step does not work: MITK-ProjectTemplate.
Jan 27 2021, 1:45 PM · MITK (v2021.02)
kislinsk triaged T28215: [Volume Visualization] Computation types Avg and Max have huge differences between CPU and GPU as Low priority.
Jan 27 2021, 1:45 PM · MITK
kahl triaged T28213: [Point Set] Clear current time step does not work as Normal priority.
Jan 27 2021, 1:28 PM · MITK (v2021.02)
kahl triaged T28212: [Point Set] Only points for time step 0 are listed as Normal priority.
Jan 27 2021, 1:20 PM · MITK (v2021.02)
gaoh triaged T28211: [Image Rendering] Color change/ Opacity strange behaviour (only in Windows installers) as Normal priority.
Jan 27 2021, 12:34 PM · MITK (v2021.02)
wiesenfa created T28210: update citation of paper to scientific reports.
Jan 27 2021, 12:25 PM · challengeR
floca triaged T28209: [MatchPoint] Preference setting additional algorithm does not work as Normal priority.
Jan 27 2021, 11:56 AM · Moved to git.dkfz.de, MITK (v2024.12)
wiesenfa added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.

additional test in test-blobPlotStabilityByAlgorithm for the case "one task out of 3 tasks contains >1 test cases". in this case bootstrap() gives result for this remaining task and stability() only produces plot with this task. @eisenman could you please check and close?

Jan 27 2021, 11:49 AM · challengeR
wiesenfa committed rCHALLENGER8ebf10fba330: test only 1 tast >1 test case (authored by wiesenfa).
test only 1 tast >1 test case
Jan 27 2021, 11:47 AM
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