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Mar 10 2021

kislinsk closed T18414: Context menu item search behaves differently for single selection vs multiple selection as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · MITK (v2024.06)
kislinsk closed T25563: Implement Requested region management correctly as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T23331: Replace deprecated mitkExtractImageFilter in PlanarFigureMaskGenerator as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, Restricted Project, MITK
kislinsk closed T26002: Unhandled exception in mitkNDITrackingDevice::ThreadStartTracking as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, Pull Request, MITK
kislinsk closed T22533: rework RTSTRUCT visualization as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · MITK (v2024.06), Restricted Project
kislinsk closed T23331: Replace deprecated mitkExtractImageFilter in PlanarFigureMaskGenerator, a subtask of T23721: Project "Astonishing Angelfish", as Wontfix.
Mar 10 2021, 9:01 AM · Request for Discussion, MITK (v2022.10)
kislinsk closed T24216: Synchronization of individual render windows: camera position, a subtask of T23758: Introduction of custom multi widget editor, as Wontfix.
Mar 10 2021, 9:01 AM · Restricted Project, MITK
kislinsk closed T23885: ILifecycleAwarePart to notify views if they are visible or not is not working as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T24216: Synchronization of individual render windows: camera position as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · MITK (v2024.06)
kislinsk closed T24729: GetPropertyKeys() in DataNode should also return propertyKeys of BaseData as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · MITK (v2024.06)
kislinsk closed T24810: Display interaction synchronization with world coordinates as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, Restricted Project, MITK
kislinsk closed T24810: Display interaction synchronization with world coordinates, a subtask of T24216: Synchronization of individual render windows: camera position, as Wontfix.
Mar 10 2021, 9:01 AM · MITK (v2024.06)
kislinsk closed T24994: Qt library version mix crashes Workbench on first launch as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25177: Use the new data node context menu for data storage inspectors as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, Request for Discussion, MITK
kislinsk closed T25316: ThemeIcon() of QmitkStyleManager and berryQtStyleManager does not work with eager plugins as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · MITK
kislinsk closed T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · MITK (v2024.06), Cleared, Restricted Project
kislinsk closed T25177: Use the new data node context menu for data storage inspectors, a subtask of T25056: Refactor data manager context menu, as Wontfix.
Mar 10 2021, 9:01 AM · MITK (v2024.06), Noteworthy
kislinsk closed T25042: How to handle update informations in heterogeneous time geometries and out of bound situations as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · MITK
kislinsk closed T25574: Remove ImageStatisticsCalculator::SetSecondaryMask as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, Restricted Project, MITK
kislinsk closed T25574: Remove ImageStatisticsCalculator::SetSecondaryMask, a subtask of T25512: Restructure image statistics calculator, as Wontfix.
Mar 10 2021, 9:01 AM · MITK
kislinsk closed T25416: How to create a new MITK Plugin - start confusing as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25421: Documentation build fails on Ubuntu 18.04 and 16.04 (different errors) as Wontfix.

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Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25676: Add new icons to the tutorial as Wontfix.

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Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25790: MaskGenerator should be abstract class as Wontfix.

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Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25742: Python wrapping might find inconsistent versions for lib and interpreter as Wontfix.

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Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25584: Workbench randomly crashes when applying colormaps as Wontfix.

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Mar 10 2021, 9:01 AM · Auto-closed, Restricted Project, MITK
kislinsk closed T25811: Add unit test for AccessTwoImagesFixedDimensionByItk_n macro as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25898: [imageStatisticsCalculator] Statistics of Masked images are computed inefficiently, a subtask of T25512: Restructure image statistics calculator, as Wontfix.
Mar 10 2021, 9:01 AM · MITK
kislinsk closed T25898: [imageStatisticsCalculator] Statistics of Masked images are computed inefficiently as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25974: add SetChartTypeForAllDataAndReload functionality as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25974: add SetChartTypeForAllDataAndReload functionality, a subtask of T25683: Chart Example Plugin, as Wontfix.
Mar 10 2021, 9:01 AM · MITK
a178n triaged T28354: Update MITK documentation on CMAKE build for plugins as Low priority.
Mar 10 2021, 8:19 AM · Next Milestone, MITK (v2021.10)

Mar 9 2021

kislinsk edited the content of Development.
Mar 9 2021, 10:08 PM · MITK

Mar 8 2021

floca committed rOBSHYPPOPY254adacd6164: Merge branch 'feature/T28333-MPI_blackbox_auto_wrapping' (authored by floca).
Merge branch 'feature/T28333-MPI_blackbox_auto_wrapping'
Mar 8 2021, 2:30 PM
s669m added a subtask for T28175: TFDA MVP v1: T28351: Trial Run with Kata Isolated Container.
Mar 8 2021, 10:46 AM · Restricted Project
s669m added a parent task for T28351: Trial Run with Kata Isolated Container: T28175: TFDA MVP v1.
Mar 8 2021, 10:46 AM · Restricted Project
s669m created T28351: Trial Run with Kata Isolated Container.
Mar 8 2021, 10:46 AM · Restricted Project
s669m updated the task description for T28350: Trial Run with Isolated Sandbox Container gVisor.
Mar 8 2021, 10:43 AM · Restricted Project
s669m added a subtask for T28175: TFDA MVP v1: T28350: Trial Run with Isolated Sandbox Container gVisor.
Mar 8 2021, 10:38 AM · Restricted Project
s669m added a parent task for T28350: Trial Run with Isolated Sandbox Container gVisor: T28175: TFDA MVP v1.
Mar 8 2021, 10:38 AM · Restricted Project
s669m triaged T28350: Trial Run with Isolated Sandbox Container gVisor as Normal priority.
Mar 8 2021, 10:37 AM · Restricted Project
kislinsk edited the content of 2020 Week 25 (Late June).
Mar 8 2021, 9:20 AM
kleina moved T25982: add all hp space modalities loguniform, ... from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26086: Fix hard coded paths from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26146: restructure gridsearch to be memory safe from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26227: Own documentation section for hyper parameter aspects from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26226: Different style for frequency definition in the parameter space definition (for grid search and alike) from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26096: Add groups to hyperparameter dict structure from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26241: VirtualFunction should get better name from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26240: File headers are "strange" from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:05 AM · Hyppopy
kleina moved T26242: Solvers exceptions due to missing hyper parameter configs should be more telling. from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:04 AM · Hyppopy
kleina moved T26243: Missing number of iterations is not handled if there is an incomplete config section from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:04 AM · Hyppopy
kleina moved T26325: Add code coverage for hyppopy from Backlog to Done on the Hyppopy board.
Mar 8 2021, 9:04 AM · Hyppopy

Mar 5 2021

kleina accepted rOBSHYPPOPY75cdf9ddd63f: Fixed T28333.

The auto wrapping functionality for MPISolverWrapper looks correct and straightforward to me. A check for function type is already included in the HyppopySolver.

Mar 5 2021, 1:41 PM
kleina added a comment to rOBSHYPPOPYba147fa770ad: Add possibility to pass comm to MPI classes..

I agree. As we already said, we have to work on the mpiplayground anyways and convert it into a propper mpi_example. I will spawn a task for that and include your suggestion there.

Mar 5 2021, 1:36 PM

Mar 4 2021

p212r added a member for Kaapana (internal): m813r.
Mar 4 2021, 5:36 PM
gaoh moved T27968: CTP gets stuck on large import from Discussion to In Progress on the Kaapana (internal) board.
Mar 4 2021, 9:35 AM · Kaapana (internal)
gaoh added a member for Kaapana (internal): d587s.
Mar 4 2021, 9:11 AM

Mar 3 2021

eisenman added a comment to T28346: Package version mismatch during upgrade.

In this case we solved it by upgrading BiocManager. Probably the previous version did not know about the later version of "graph".

Mar 3 2021, 8:17 PM · challengeR
wiesenfa added a comment to T28346: Package version mismatch during upgrade.

graph had only been used for networks, I guess version 1.62 is sufficient

Mar 3 2021, 7:45 PM · challengeR
eisenman added a comment to T28346: Package version mismatch during upgrade.

The package "graph" was moved from CRAN to Bioconductor:
https://cran.r-project.org/web/packages/graph/index.html

Mar 3 2021, 2:10 PM · challengeR
eisenman triaged T28346: Package version mismatch during upgrade as High priority.
Mar 3 2021, 2:06 PM · challengeR
kalali edited projects for T26485: [Segmentation] PACS mode is active while segmentation is drawn, added: Request for Discussion, Next Milestone; removed Restricted Project.

Also when changing the interaction mode (PACS <-> MITK) while the segmentation tool (e.g. Add) is active, the changed interaction mode will overwrite the segmentation interaction and the render window changes again while drawing the segmentation.

Mar 3 2021, 11:53 AM · MITK (v2021.10)

Mar 2 2021

kislinsk closed T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) as Resolved.
Mar 2 2021, 11:12 PM · MITK
kislinsk committed rMITKbc70fcca1f66: Make use of GetRenderWindowPart() more robust (authored by kislinsk).
Make use of GetRenderWindowPart() more robust
Mar 2 2021, 11:12 PM
kislinsk committed rMITK288ecbcf8528: Make use of GetRenderWindowPart() more robust (authored by kislinsk).
Make use of GetRenderWindowPart() more robust
Mar 2 2021, 11:12 PM
kislinsk lowered the priority of T27196: Rewrite packaging of MITK from High to Normal.
Mar 2 2021, 11:10 AM · MITK (v2024.06), Cleared
kislinsk closed T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Mar 2 2021, 11:10 AM · MITK (v2024.06), Cleared
kislinsk closed T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services, a subtask of T23301: XNAT improvements, as Resolved.
Mar 2 2021, 11:10 AM · Auto-closed, MITK
kislinsk closed T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services as Resolved.
Mar 2 2021, 11:10 AM · Restricted Project, CSI-HD, MITK
kislinsk added a revision to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..): Unknown Object (Differential Revision).
Mar 2 2021, 10:57 AM · MITK
thomass added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

Since you also mentioned different editors: Not sure if this is also related but one of the terminal outputs of the testers was:

Mar 2 2021, 9:51 AM · MITK
kalali committed rMITK7014777eedae: Preserve color selection (authored by kalali).
Preserve color selection
Mar 2 2021, 9:11 AM
kalali committed rMITK372746b5a2ae: Initialize color member with red (authored by kalali).
Initialize color member with red
Mar 2 2021, 9:11 AM
kalali committed rMITK93758e9b6fe4: Correctly initialize the color selection dialog (authored by kalali).
Correctly initialize the color selection dialog
Mar 2 2021, 9:11 AM
kislinsk added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

I will go through the source tree and as a rule of thumb I will just add nullptr checks if the render window part is only used for rendering updates and add the OPEN strategy if more is done with the reference and there is not already a nullptr check.

Mar 2 2021, 8:49 AM · MITK
kislinsk claimed T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Mar 2 2021, 8:45 AM · MITK

Mar 1 2021

kislinsk renamed T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) from [Docu] Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) to Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Mar 1 2021, 8:57 PM · MITK
kislinsk added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

I tested it in debug mode and the fix is pretty simple. The crashes occurs in lines like GetRenderWindowPart()->RequestUpdate() when GetRenderWindowPart() returns a nullptr. I guess there are quite a few unchecked lines like this in MITK.

Mar 1 2021, 8:57 PM · MITK
thomass updated the task description for T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Mar 1 2021, 5:38 PM · MITK
p212r added a member for MIC: m813r.
Mar 1 2021, 5:04 PM
s434n added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

I got the same result as kislinsk, the crash only occurs when the documentation is open and not in the background

Mar 1 2021, 4:07 PM · MITK
kislinsk added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

When I reproduced the issue with MatchPoint, it didn't happen when the documentation was in the background (i.e. the documentation is not the active editor). I guess this is a good starting point for debugging.

Mar 1 2021, 3:16 PM · MITK
thomass added a comment to T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).

With the modelfit inspector it most often crashed, if the user clicked on a datanode in the datastorage

Mar 1 2021, 3:07 PM · MITK
thomass updated the task description for T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Mar 1 2021, 3:02 PM · MITK
thomass renamed T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) from [Docu] Crashes when using plugin with documentation opened to [Docu] Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..).
Mar 1 2021, 2:49 PM · MITK
thomass triaged T28341: Crashes when using plugin with documentation opened (in MatchPoint,Modelfit,..) as High priority.
Mar 1 2021, 2:48 PM · MITK
holzwart added a member for Photoacoustics: p253n.
Mar 1 2021, 10:58 AM
holzwart added a member for IMSY: p253n.
Mar 1 2021, 10:57 AM
kislinsk edited the content of Code Guarantees.
Mar 1 2021, 10:39 AM
kislinsk edited the content of Code Guarantees.
Mar 1 2021, 10:29 AM
kislinsk renamed Code Guarantees from Code guarantees to Code Guarantees.
Mar 1 2021, 10:19 AM
kislinsk published a new version of Git Branching Model.
Mar 1 2021, 9:43 AM · MITK

Feb 26 2021

floca committed rOBSHYPPOPY7e2b0026d800: Extracted mpi4py into an optional_requirements.txt for now, (authored by floca).
Extracted mpi4py into an optional_requirements.txt for now,
Feb 26 2021, 2:38 PM
floca committed rOBSHYPPOPY8fcdb9d07f73: Made MPI an extra in the requirement specification because (authored by floca).
Made MPI an extra in the requirement specification because
Feb 26 2021, 12:27 PM
floca committed rOBSHYPPOPY3636699c3c1e: Removed unneeded dependency to MPIBlackboxFunction (authored by floca).
Removed unneeded dependency to MPIBlackboxFunction
Feb 26 2021, 12:27 PM

Feb 25 2021

k656s moved T28335: Landing Page container automatically get killed in every minute from Discussion to Resolved on the Kaapana (internal) board.
Feb 25 2021, 2:59 PM · Request for Discussion, Kaapana (internal)
k656s closed T28335: Landing Page container automatically get killed in every minute as Resolved.

Resolved, error was in the docker container

Feb 25 2021, 2:59 PM · Request for Discussion, Kaapana (internal)
schererj moved T28229: build getting failed after integration of tfda module from kaapana to Kaapana - Internal from In Progress to Resolved on the Kaapana (internal) board.
Feb 25 2021, 11:53 AM · Kaapana (internal)
s669m added a comment to T28335: Landing Page container automatically get killed in every minute .

Issue in landing page tfda, base pods .

Feb 25 2021, 10:15 AM · Request for Discussion, Kaapana (internal)