Page MenuHomePhabricator
Feed All Stories

Sep 17 2020

kompan triaged T27738: Curve Color selection not possible in ModelFit Inspector view settings as Normal priority.
Sep 17 2020, 1:02 PM · MITK (v2023.12), Cleared

Sep 16 2020

thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I agree :)

Sep 16 2020, 1:35 PM · MITK (v2022.04), Cleared
kalali added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

We discussed the open todos concerning Checklists (storage, format, language) and decided that this topic should be prioritized higher but not for the milestone of the new release / current documentation refactoring.
I think this would be a good option for the phase after the release but if you have a strong point to do it now, please state here.

Sep 16 2020, 12:21 PM · MITK (v2022.04), Cleared
thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

just started to have a look.

Sep 16 2020, 12:06 PM · MITK (v2022.04), Cleared
eisenman added a comment to T27338: Report contains misleading information on missing values.

I like the proposal!
"0 missing cases have been found in the data set. However, performance of not all algorithms has been observed for all cases. Therefor, missings have been inserted in the following cases:"

Sep 16 2020, 9:43 AM · challengeR (v1.0)

Sep 15 2020

kalali raised the priority of T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Normal to High.

@thomass, @gaoh Can someone please proofread?

Sep 15 2020, 8:11 PM · MITK (v2022.04), Cleared
kalali raised the priority of T27737: Extend "Checkliste Segmentierung – Optionen" from Normal to High.
Sep 15 2020, 8:02 PM · MITK (v2022.04), Cleared
kalali updated the task description for T25804: [Selection concept] Set 'selected' property when using the new selection concept.
Sep 15 2020, 7:54 PM · MITK (v2024.06), Request for Discussion

Sep 14 2020

schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Yes, the workbench is starting without any issues.

Sep 14 2020, 6:07 PM · Missing Info, DICOM, MITK
gaoh added a member for SIDT: m139l.
Sep 14 2020, 4:40 PM
gaoh closed T27110: [MITKDoc] Revise Command Line Tool/ Automatisation Plugin Documentation as Resolved.
Sep 14 2020, 3:32 PM · Cleared, MITK (v2021.02)
gaoh committed rMITKc4b6bb115cd1: T27110 Revice Command Line Tool. (authored by gaoh).
T27110 Revice Command Line Tool.
Sep 14 2020, 3:28 PM
gaoh committed rMITK032e29703e98: T27110 Revice Command Line Tool: (authored by gaoh).
T27110 Revice Command Line Tool:
Sep 14 2020, 3:28 PM
gaoh committed rMITK0fdef86d49b2: update plugin name cmdlinemodules (authored by gaoh).
update plugin name cmdlinemodules
Sep 14 2020, 3:28 PM
gaoh committed rMITKe22741af90b4: Merge branch 'develop' into feature/T27110ReviseCommandLineTool (authored by gaoh).
Merge branch 'develop' into feature/T27110ReviseCommandLineTool
Sep 14 2020, 3:28 PM
gaoh committed rMITKcb64d430b5fa: Merge branch 'develop' into feature/T27110ReviseCommandLineTool (authored by gaoh).
Merge branch 'develop' into feature/T27110ReviseCommandLineTool
Sep 14 2020, 3:28 PM
gaoh committed rMITKc91fd01c42af: updated image statistics documentation. (authored by gaoh).
updated image statistics documentation.
Sep 14 2020, 3:28 PM
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Did you your "release ldd" Workbench started and worked properly at all? Seems like most of the SOs could not be loaded correctly. Not even MitkCore. I would assume that workbench does not even start?!?

Sep 14 2020, 3:24 PM · Missing Info, DICOM, MITK
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Sep 14 2020, 2:45 PM · MITK (v2022.04), Cleared
kalali triaged T27737: Extend "Checkliste Segmentierung – Optionen" as Normal priority.
Sep 14 2020, 2:42 PM · MITK (v2022.04), Cleared
kalali moved T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Backlog to Segmentation on the MITK (v2021.02) board.
Sep 14 2020, 2:39 PM · MITK (v2022.04), Cleared
schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I hope I did it right..

Sep 14 2020, 1:19 PM · Missing Info, DICOM, MITK
kalali added a revision to T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept: Unknown Object (Differential Revision).
Sep 14 2020, 1:13 PM · MITK (v2021.02)
gaoh added a member for Kaapana (internal): m139l.
Sep 14 2020, 1:10 PM
rosst committed rRMISf8b356bc0a20: add create participants statistics (authored by rosst).
add create participants statistics
Sep 14 2020, 12:01 PM
kompan committed rMITK75a9f6c2b734: Revision of perfusion curve descriptive parameters view documentation (T27709… (authored by kompan).
Revision of perfusion curve descriptive parameters view documentation (T27709…
Sep 14 2020, 9:19 AM
kompan committed rMITKeb645be6e729: Remove contact information section. (authored by kompan).
Remove contact information section.
Sep 14 2020, 9:19 AM
kompan committed rMITK959aa2589d57: Rewrite manual and add parameter calculation visualization figure. (authored by kompan).
Rewrite manual and add parameter calculation visualization figure.
Sep 14 2020, 9:18 AM
kompan committed rMITK64fd20fdc2e5: Adapt vies names for F1-help. (authored by kompan).
Adapt vies names for F1-help.
Sep 14 2020, 9:18 AM

Sep 12 2020

kalali renamed T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Extend "Checkliste Segmentierung – Manuelle Segmentierung" to Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".
Sep 12 2020, 1:04 PM · MITK (v2022.04), Cleared
kalali updated subscribers of T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I updated the document and added content to explicitly test

  • segmentation on a 3D image
  • 3D segmentation (static) on a 4D image
  • 4D segmentation (dynamic) on a 4D image
Sep 12 2020, 12:56 PM · MITK (v2022.04), Cleared

Sep 11 2020

floca updated subscribers of T27718: Miniapp for basic DICOM testing.

@schererj Is this needed for the kaapana release?

Sep 11 2020, 9:22 PM · MITK (v2023.12), Kaapana (internal)
floca added a comment to T27718: Miniapp for basic DICOM testing.

check content, e.g. if != 0 voxels exist etc

Sep 11 2020, 9:13 PM · MITK (v2023.12), Kaapana (internal)
kalali triaged T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation as High priority.
Sep 11 2020, 6:29 PM · MITK (v2021.02)
kislinsk triaged T27720: mitkPackageTest fails on Windows Nightlies as Normal priority.
Sep 11 2020, 3:19 PM · MITK (v2024.06)
floca added a comment to T27569: US DICOM images are displayed turquoise and LUT cannot be changed.

Just checked GDCM 3.0.7 if by chance the issue was fixed there, unfortunately not.

Sep 11 2020, 3:15 PM · Restricted Project, MITK
kislinsk placed T27701: Overhaul or remove PluginGenerator up for grabs.
Sep 11 2020, 3:09 PM · MITK, Next Milestone
kislinsk committed rMITKa02df44c8039: Merge branch 'bugfix/T27701-PluginGenerator' into develop (authored by kislinsk).
Merge branch 'bugfix/T27701-PluginGenerator' into develop
Sep 11 2020, 3:09 PM
kislinsk added a comment to T27701: Overhaul or remove PluginGenerator.

Pushed new branch bugfix/T27701-PluginGenerator.

Sep 11 2020, 3:08 PM · MITK, Next Milestone
nolden added a comment to T27569: US DICOM images are displayed turquoise and LUT cannot be changed.

http://gdcm.sourceforge.net/wiki/index.php/Color_Space_Transformations

Sep 11 2020, 2:30 PM · Restricted Project, MITK
nolden added a comment to T27569: US DICOM images are displayed turquoise and LUT cannot be changed.

Just checked GDCM 3.0.7 if by chance the issue was fixed there, unfortunately not.

Sep 11 2020, 2:27 PM · Restricted Project, MITK
neher added a comment to T27718: Miniapp for basic DICOM testing.

check content, e.g. if != 0 voxels exist etc

Sep 11 2020, 1:13 PM · MITK (v2023.12), Kaapana (internal)
kalali moved T23811: PatientViewPlugin ++ from MITK Meeting to Backlog on the Request for Discussion board.
Sep 11 2020, 12:51 PM · Request for Discussion, MITK
kompan added a comment to T27713: [Segmentation] Disable "New" button when no image is selected.

Good point! It only occurs after I have removed the image node. When I initially open the segmentation plugin, the new button still is deactivated as it should be.

Sep 11 2020, 12:39 PM · MITK (v2021.10), Request for Discussion
kalali moved T26854: Unattended Qt installation from In Progress to Backlog on the CI board.
Sep 11 2020, 12:36 PM · CI, Restricted Project, MITK
kalali added a comment to T27713: [Segmentation] Disable "New" button when no image is selected.

Also, the "red warning" does not change back to "Please select an image" if an image is removed (which was automatically selected before).

Sep 11 2020, 12:35 PM · MITK (v2021.10), Request for Discussion
kislinsk triaged T27718: Miniapp for basic DICOM testing as Wishlist priority.
Sep 11 2020, 12:27 PM · MITK (v2023.12), Kaapana (internal)
kislinsk triaged T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start as Normal priority.
Sep 11 2020, 12:26 PM · MITK (v2021.02)
kislinsk added a parent task for T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start : T27196: Rewrite packaging of MITK.
Sep 11 2020, 12:25 PM · MITK (v2021.02)
kislinsk added a subtask for T27196: Rewrite packaging of MITK: T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .
Sep 11 2020, 12:25 PM · MITK (v2024.06), Cleared
kislinsk moved T27701: Overhaul or remove PluginGenerator from Backlog to MITK Meeting on the Request for Discussion board.
Sep 11 2020, 12:20 PM · MITK, Next Milestone
kislinsk claimed T27701: Overhaul or remove PluginGenerator.
Sep 11 2020, 12:20 PM · MITK, Next Milestone
kislinsk added a comment to T27701: Overhaul or remove PluginGenerator.

Yes, let's deactivate them for now (again), and discuss it in the next MITK meeting.

Sep 11 2020, 12:20 PM · MITK, Next Milestone
kalali added a comment to T27713: [Segmentation] Disable "New" button when no image is selected.

Also, the checklist states "Er ist disabled"

Sep 11 2020, 12:03 PM · MITK (v2021.10), Request for Discussion
clueth added projects to T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start : MITK, Restricted Project.
Sep 11 2020, 12:02 PM · MITK (v2021.02)
kalali added a comment to T27506: Extend checklists for segmentation view.

What exactly? I copied the checklists to my local machine and I'm working on T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

Sep 11 2020, 11:48 AM · MITK (v2022.04), Cleared
kalali renamed T26989: [Checklist] GUI test data originates from different sources from [Checklist] GUI test data originates from different sources to [Checklist] GUI test data originates from different sources.
Sep 11 2020, 11:47 AM · MITK (v2021.10)
nolden added a comment to T26451: DICOM plugin cannot parse DICOM directories in macOS installer.

@jsolislemus Sorry for the long delay, I kind of missed your comment and related discussions happened in T27669

Sep 11 2020, 11:45 AM · MITK
wiesenfa added a comment to T27338: Report contains misleading information on missing values.

the first sentence refers to the fact that no missings have been found in the data set. would rephrasing to "0 missing cases entered in the data set have been found" help? the next sentence is about cases which have been inserted by the sanity check. Would adding "However, ..." in between help?
If you have any other suggestions, I would be happy to include them

Sep 11 2020, 11:42 AM · challengeR (v1.0)
clueth updated the task description for T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .
Sep 11 2020, 11:37 AM · MITK (v2021.02)
kislinsk added a member for MIC: b030s.
Sep 11 2020, 11:23 AM
nolden added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

@schererj we just discussed this in the MITK meeting. Could you try something? It would be interesting to compare the outputs of

Sep 11 2020, 11:22 AM · Missing Info, DICOM, MITK
schererj created T27718: Miniapp for basic DICOM testing.
Sep 11 2020, 10:58 AM · MITK (v2023.12), Kaapana (internal)
clueth created T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .
Sep 11 2020, 10:43 AM · MITK (v2021.02)
floca added a comment to T27506: Extend checklists for segmentation view.

Damn I have forgotten to copy the checklist to a reachable share. @kalali Is it already done now or obsolete?

Sep 11 2020, 10:33 AM · MITK (v2022.04), Cleared
kalali added a comment to T27506: Extend checklists for segmentation view.

All tools have to check for the following usage scenario:

  • All this with an image which time geometry does not start at 0 ms (e.g. MITK-Data/3D+t-ITKIO-TestData/LinearModel_4D_arbitrary_time_geometry.nrrd)
Sep 11 2020, 10:22 AM · MITK (v2022.04), Cleared
nolden added a project to T27701: Overhaul or remove PluginGenerator: Request for Discussion.

Since we have this task now I suggest to deactivate them "somewhere globally" and discuss later how to proceed. My guess would be it is quite some effort. Having tests for the generator, packging and the extension mechanism is very important I think, but I'm not sure what the current tests cover and if it's worth to fix.

Sep 11 2020, 10:15 AM · MITK, Next Milestone
kalali triaged T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" as Normal priority.
Sep 11 2020, 10:10 AM · MITK (v2022.04), Cleared
kalali added a comment to T27506: Extend checklists for segmentation view.

I started with the checklists I from E130-Daten\Release\Checklisten\MITK Workbench Release.

Sep 11 2020, 10:07 AM · MITK (v2022.04), Cleared
kislinsk edited Description on Tassilo Wald.
Sep 11 2020, 9:51 AM
kislinsk edited Description on Tassilo Wald.
Sep 11 2020, 9:50 AM
kislinsk created Tassilo Wald.
Sep 11 2020, 9:29 AM
kislinsk created webChallengeR.
Sep 11 2020, 9:15 AM

Sep 10 2020

kislinsk added a project to T27263: Measurements and pointsets display no valuable information: MITK.
Sep 10 2020, 5:38 PM · MITK (v2022.04)
kislinsk added a project to T27339: Provide public MITK ModelFit installer on a regular basis: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27031: [Image statistics] Define identifier for statistics and histogram: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27270: Planar figures are inconsistently bound by reference image: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27258: [Image statistics] Deprecate QmitkImageStatisticsCalculationJob : MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27269: PlanarCircle shrinks in size when moved towards image boundaries: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27495: [Registration] Evaluator/Manipulator wipe mode is lacking one click behind: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared
kislinsk added a project to T27451: [Registration] Mapper: Changed default level/window after identity mapping : MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared
kislinsk added a project to T26288: MRI Perfusion view should only generate concentration images once: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared
kislinsk added a project to T26098: [ImageStatistics] Histogram Statistics need to be tested: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Restricted Project
kislinsk added a project to T25192: Enable DICOM SEG conversion for nrrd segmentations: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), MICO (Demo MICCAI 2018)
kislinsk added a project to T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared
kislinsk added a project to T26950: Add rule class for DICOM Seg relations to source image: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared
kislinsk added a project to T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG): MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27032: [Image statistics] Discuss Histogram with respect to the new multi node selection: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27284: [Image Statistic] Histogram is only supported with one image and <=1 ROI: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27271: [Image Statistics] Double clicking to isolate one graph only works on already enabled graphs: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27285: [Image Statistics] QmitkChart widget should support ID or allow control over labels: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27306: [statistics] Errors caused in MitkChart when using histogram and intensity profile widgets.: MITK.
Sep 10 2020, 5:38 PM · MITK (v2023.12)
kislinsk added a project to T27350: Refactoring of T1 map calculation/selection for perfusion and CEST: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06)
kislinsk added a project to T27357: Check/Update DICOMTags of interest: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared, HiGHmed
kislinsk added a project to T27664: Check conversion from signal to concentration for a turboFLASH sequence: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared
kislinsk added a project to T27666: Concentration curve converter view- missing echo time unit: MITK.
Sep 10 2020, 5:38 PM · MITK (v2022.04), Cleared
kislinsk added a project to T27654: Refactor concentration curve converter view to use new selection concept: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared
kislinsk added a project to T27667: Concentration curve converter view- errors in formula for T2-weighted signal conversion: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared
kislinsk added a project to T27671: Concentration Curve Converter: Crash due to baseline avergaing: MITK.
Sep 10 2020, 5:38 PM · MITK (v2024.06), Cleared