Deleted branch from rMITK MITK: bugfix/T30483-FixTyposInSegmentationUtilities.
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Jun 27 2024
Pushed new branch to rMITK MITK: bugfix/T30483-FixTyposInSegmentationUtilities.
Jun 26 2024
Jun 25 2024
Numpy dependency updated for SegmentAnything & MedSAM installation in https://github.com/MIC-DKFZ/agent-sam.git
Now the both tools should work.
Pushed new branch to rMITK MITK: bugfix/T30479-totalseg-dependency-update.
As far as SAM/MedSAM is concerned, we can add numpy<2 in our agent-sam repo and fix the issue without code changes to MITK.
Perhaps we should think about creating Totalsegmentator "agents" scripts to deal with such production issues.
The numpy version upgrade seems disruptive. The current latest torch version 2.3.1 is incompatible with numpy v2 while running torch.from_numpy conversions
Since the numpy v2 release, Totalsegmentator repo has updated its dependency specification. See: https://github.com/wasserth/TotalSegmentator/commit/e648b08445434585511a8a7c8118e34f5309ce05
However, new a release hasn't occurred on pypi.
damn. you are right. Than i will revert it and change AVID to add in front of the first '.'.
Wouldn't that break support of compressed files like foo.nii.gz for example?
Pushed new branch to rMITK MITK: bugfix/T29421-RemoveCPPRestSDK.
Jun 24 2024
FYI
FYI
Jun 19 2024
Deleted branch from rMITK MITK: feature/T29390-Improve_conversion_for_multilabel.
Deleted branch from rMITK MITK: feature/T30469-SupportExperimentalFilesystem.
Deleted branch from rMITK MITK: feature/T30387-highlight_labels.
Deleted branch from rMITK MITK: bugfix/T29317-CleanUpDICOMBrowser.
Meanwhile a lot of code in CTK regarding the DICOM browser changed and the branch her is outdated so much that it makes sense to start from scratch again, if really necessary at all.
Deleted branch from rMITK MITK: feature/T30222-MatchImageMiniApp_add_parameter_support.
Deleted branch from rMITK MITK: feature/T30294-Remove_LabelSet_class.
Deleted branch from rMITK MITK: bugfix/T28487-MitkMRSignal2Concentration_handle_exceptions.
Deleted branch from rMITK MITK: bugfix/T27196-RewritePackaging.
Deleted branch from rMITK MITK: bugfix/T29371-ImproveRegistrationIcons.
Deleted branch from rMITK MITK: bugfix/T29603-MatchVisualStudioCompilerErrorsBetterToGCCAndClang.
Deleted branch from rMITK MITK: bugfix/T30321-Ubuntu_23.10_Compatibility.
Deleted branch from rMITK MITK: bugfix/T30334-FixPlaneGeometryDataToSurfaceFilter.
We weren't able to get the PR working.
Deleted branch from rMITK MITK: feature/T30255-RenderWindowUtilityWidgets.
Jun 18 2024
Deleted branch from rMITK MITK: feature/T30300-totalseg-fastbox.
Deleted branch from rMITK MITK: feature/T30353-totalseg-update.
Deleted branch from rMITK MITK: bugfix/T30392-totalseg-nnunet-confirmbutton.
Deleted branch from rMITK MITK: feature/T30355-medsam-tool.
Deleted branch from rMITK MITK: feature/T30357-medsam-doku.
Deleted branch from rMITK MITK: feature/T30231-monailabel-doku.
Deleted branch from rMITK MITK: feature/T30426-doc-updates.
Deleted branch from rMITK MITK: feature/T30447-totalseg-levelwindow.
Deleted branch from rMITK MITK: feature/T30430-python-venv-check.
Deleted branch from rMITK MITK: feature/T30457-totalseg-mri.
Deleted branch from rMITK MITK: feature/T29295-monai-tool-httplib.
Jun 17 2024
I close this task as invalid. We were not able to reproduce this issue at all and we never heard of if by anyone else. Feel free to reopen the task if there's a reliable recipe for reproduction.
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