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Jul 4 2023

floca moved T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:15 PM · MITK (v2024.06), Checklist
floca moved T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:15 PM · MITK (v2024.06), Checklist
floca moved T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range? from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:14 PM · MITK (v2024.12), Restricted Project, Checklist
floca moved T29204: [SEG] Rework properties of Label class + add instance information from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:13 PM · Moved to git.dkfz.de, MITK (v2024.12), Breaking Change
floca moved T29639: [Registration] Mapping crashes when super-sampling is activated from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:13 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info
floca moved T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:12 PM · MITK (v2024.06), Missing Info
floca moved T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:12 PM · MITK (v2024.06), Checklist
floca moved T29535: Reinit of scene with planar figure while the Display is closed leads to crash from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:11 PM · Moved to git.dkfz.de, MITK (v2024.12), Known Issue
floca moved T29616: [DICOM] Add option to save images as DICOM from Backlog to MITK Meeting on the Request for Discussion board.
Jul 4 2023, 5:10 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca added a comment to T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI.

Is this still an open thing?

Jul 4 2023, 5:08 PM · Moved to git.dkfz.de, MITK
floca moved T29569: [Checklist] Update TotalSegmentator & nnUNet checklist from Tests/Checklists to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:07 PM · MITK (v2023.12), Checklist
floca moved T29578: [Segmentation] Removing last selected region in picking tool does not update preview from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:06 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
floca moved T29590: [Segmentation] [Erase] Erasing everything of the selected label when clicking on background is surprising from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:06 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
floca moved T29583: [Interpolation] Interpolation is not triggered correctly from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:06 PM · MITK (v2024.06), Checklist
floca moved T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled" from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:06 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
floca moved T29594: Improve MITK help text for nnUNet tool from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:05 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Request for Discussion
floca moved T29540: SAM as 2D tool in MITK from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:04 PM · MITK (v2024.06)
floca moved T29549: [Segmentation] Label search does not work from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:04 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca closed T29495: [SEG] Rework segmentation view UX as Resolved.
Jul 4 2023, 5:04 PM · MITK (v2023.12)
floca moved T29526: [Segmentation] Workbench crashes when closing render window part with active tool from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:02 PM · MITK (v2024.06)
floca moved T29396: [Segmentation] Newly created labelset image has wrong image type from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:00 PM · MITK (v2024.12)
floca moved T29392: [SEG] Add dedicated writer to store multi-label images in nifti from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:00 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca moved T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:00 PM · MITK (v2023.12), Checklist

Jun 29 2023

floca raised the priority of T27718: Miniapp for basic DICOM testing from Wishlist to Normal.
Jun 29 2023, 11:48 AM · MITK (v2023.12), Kaapana (internal)

Jun 27 2023

floca updated subscribers of T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem.
In T29650#248947, @gaoh wrote:

@k656s has an example dataset. I am still at the release version before (I think 2022.10?) but I will update to the current release. Could this already help?

Yes, it could. I thought something like this was already introduced. @kislinsk, or?

Jun 27 2023, 5:46 PM · Next Milestone, Request for Discussion, MITK
floca added a comment to T29655: SAM tool: Enable 2D RGB image support.

what is the problem here/where do you lose the other channels? shouldn't it work out of the box already?

Jun 27 2023, 5:30 PM · MITK (v2023.12)
floca committed rMITKd5929d7ba0a9: Added override for isEmpty (authored by floca).
Added override for isEmpty
Jun 27 2023, 4:37 PM
floca committed rMITK458e53a8e4bc: Added helper function to generate sub/super sampled geometries for mapping. (authored by floca).
Added helper function to generate sub/super sampled geometries for mapping.
Jun 27 2023, 4:37 PM
floca committed rMITKac628e8f5ff2: Added miniapp for Mapping (authored by floca).
Added miniapp for Mapping
Jun 27 2023, 4:37 PM
floca committed rMITK5cd909f761f7: Added miniapp for matching (authored by floca).
Added miniapp for matching
Jun 27 2023, 4:37 PM
floca committed rMITKb5d67c246b32: Added slabbedHead and headNeck reg algorithm (authored by floca).
Added slabbedHead and headNeck reg algorithm
Jun 27 2023, 4:37 PM
floca closed T29611: [REG] Add MatchPoint slabbedHead and HeadNeck algorithms as Resolved by committing rMITKb5d67c246b32: Added slabbedHead and headNeck reg algorithm.
Jun 27 2023, 4:37 PM · Noteworthy, MITK
floca closed T29607: [REG] Add MiniApp for MatchPoint base matching/registration as Resolved by committing rMITK6059a719c7ac: Add MiniApps for MatchPoint registration and mapping.
Jun 27 2023, 4:37 PM · MatchPoint, Noteworthy, MITK
floca committed rMITK6059a719c7ac: Add MiniApps for MatchPoint registration and mapping (authored by floca).
Add MiniApps for MatchPoint registration and mapping
Jun 27 2023, 4:37 PM
floca closed T29606: [REG] Add MiniApp for MatchPoint base mapping as Resolved by committing rMITK6059a719c7ac: Add MiniApps for MatchPoint registration and mapping.
Jun 27 2023, 4:37 PM · Noteworthy, MITK
floca committed rMITKffcd7442e2fc: Fixed review comments (authored by floca).
Fixed review comments
Jun 27 2023, 4:37 PM
floca committed rMITKfb81d8a8d92f: Added feature of anisotropic super sampling (authored by floca).
Added feature of anisotropic super sampling
Jun 27 2023, 4:37 PM
floca added a project to T29611: [REG] Add MatchPoint slabbedHead and HeadNeck algorithms: Noteworthy.
Jun 27 2023, 8:52 AM · Noteworthy, MITK
floca added projects to T29607: [REG] Add MiniApp for MatchPoint base matching/registration: Noteworthy, MatchPoint.
Jun 27 2023, 8:51 AM · MatchPoint, Noteworthy, MITK
floca added a project to T29606: [REG] Add MiniApp for MatchPoint base mapping: Noteworthy.
Jun 27 2023, 8:51 AM · Noteworthy, MITK

Jun 23 2023

floca added projects to T29650: mitk-flow " Please reinitialize the selected segmentation image!" problem: Request for Discussion, Next Milestone.

@gaoh do you have example data to reproduce this situation. That would help to replicate it and search for the best solution.
Which version of MITK was it?

Jun 23 2023, 2:29 PM · Next Milestone, Request for Discussion, MITK

Jun 22 2023

floca moved T29649: Classification Module clean up from Backlog to MITK Meeting on the Request for Discussion board.

That is a first shorted list. Other apps and plugins are already ruled out (e.g. due to Vigra dependency). We no shuold assess which of those can really stay in the main mitk repo.

Jun 22 2023, 1:35 PM · MITK (v2023.12), Request for Discussion
floca triaged T29649: Classification Module clean up as Normal priority.
Jun 22 2023, 1:33 PM · MITK (v2023.12), Request for Discussion

Jun 16 2023

floca added a comment to T29634: Upgrade ITK from v5.2.1 (patched) to v5.3.0.

thanks for taking care. 🙏

Jun 16 2023, 3:38 PM · MatchPoint, MITK
floca added a comment to T29634: Upgrade ITK from v5.2.1 (patched) to v5.3.0.

they are ok

Jun 16 2023, 3:37 PM · MatchPoint, MITK

Jun 13 2023

floca added a comment to T29620: Check if GenericFitMiniApp supports the needed model.

What is the status here?

Jun 13 2023, 10:59 AM · Missing Info, MITK, Restricted Project, Restricted Project

May 24 2023

floca added a project to T29620: Check if GenericFitMiniApp supports the needed model: Missing Info.

please ask tanja before I say something wrong.

May 24 2023, 7:31 PM · Missing Info, MITK, Restricted Project, Restricted Project
floca triaged T29620: Check if GenericFitMiniApp supports the needed model as Normal priority.
May 24 2023, 5:47 PM · Missing Info, MITK, Restricted Project, Restricted Project
floca added a comment to T29608: [Segmentation Utils] Workbench crashes for Morphological operations.

No that should not happen. What is the rest of the stack trace? Does it fail to clone a layer image or the LabelSetImage itself?

May 24 2023, 5:30 AM · MITK (v2023.12)

May 23 2023

floca added a comment to T29614: [Segmentation] "Ignore Label Lock" wipes off any label present in it.

I don't understand the propblem. It behaves like it should. If you ignore locks and transfer all otsu labels, all other labels of a group will be wiped (but still the label exist, as tools do not delete label instances but only pixels), because otsu covers all pixels.

May 23 2023, 5:50 PM · MITK
floca triaged T29611: [REG] Add MatchPoint slabbedHead and HeadNeck algorithms as Normal priority.
May 23 2023, 11:02 AM · Noteworthy, MITK
floca committed rMPdadbcbf3398f: Fixed T29610 - HeadNeck auto detect (authored by floca).
Fixed T29610 - HeadNeck auto detect
May 23 2023, 11:00 AM

May 21 2023

floca added a comment to T29606: [REG] Add MiniApp for MatchPoint base mapping.

Pushed new branch to rMITK MITK: feature/T29606-Add_MatchPoint_MiniApps.

May 21 2023, 11:35 AM · Noteworthy, MITK
floca added a revision to T29607: [REG] Add MiniApp for MatchPoint base matching/registration: Unknown Object (Differential Revision).
May 21 2023, 11:35 AM · MatchPoint, Noteworthy, MITK
floca added a revision to T29606: [REG] Add MiniApp for MatchPoint base mapping: Unknown Object (Differential Revision).
May 21 2023, 11:35 AM · Noteworthy, MITK
floca triaged T29607: [REG] Add MiniApp for MatchPoint base matching/registration as Normal priority.
May 21 2023, 11:28 AM · MatchPoint, Noteworthy, MITK
floca triaged T29606: [REG] Add MiniApp for MatchPoint base mapping as Normal priority.
May 21 2023, 11:27 AM · Noteworthy, MITK

May 19 2023

floca added a comment to T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview.

🙏

May 19 2023, 9:08 AM · Missing Info, MITK

May 17 2023

floca reopened T28150: [RT] Refactor RT Dose reader as "Open".
May 17 2023, 5:20 PM · Moved to git.dkfz.de, MITK
floca edited projects for T28156: [Segmentation] Fix timestep / timepoint types, added: Next Milestone; removed Auto-closed.
May 17 2023, 5:19 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca reopened T28156: [Segmentation] Fix timestep / timepoint types as "Open".
May 17 2023, 5:19 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca reopened T28192: [Registration] Auto selection (and listening) in MatchPoint views as "Open".
May 17 2023, 5:18 PM · Moved to git.dkfz.de, MITK
floca reopened T24729: GetPropertyKeys() in DataNode should also return propertyKeys of BaseData as "Open".
May 17 2023, 5:13 PM · MITK (v2024.12)
floca reopened T26473: Optimize QmitkChartWidget interface, a subtask of T27285: [Image Statistics] QmitkChart widget should support ID or allow control over labels, as Open.
May 17 2023, 5:08 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca reopened T26473: Optimize QmitkChartWidget interface as "Open".
May 17 2023, 5:08 PM · Moved to git.dkfz.de, MITK
floca reopened T27568: US 2D image cannot be read: invalid tilt information as "Open".
May 17 2023, 5:07 PM · Moved to git.dkfz.de, Restricted Project, MITK
floca reopened T27568: US 2D image cannot be read: invalid tilt information, a subtask of T27554: Handling of 2D and 2D+t sonographic (US) images, as Open.
May 17 2023, 5:07 PM · Restricted Project, MITK
floca reopened T27570: US DICOM images are read as 3D volume, a subtask of T27554: Handling of 2D and 2D+t sonographic (US) images, as Open.
May 17 2023, 5:03 PM · Restricted Project, MITK
floca reopened T27570: US DICOM images are read as 3D volume as "Open".
May 17 2023, 5:03 PM · Auto-closed, Missing Info, Restricted Project, MITK
floca reopened T24540: DICOMReader module does not support Philips US 3D files on its "own" as "Open".
May 17 2023, 5:03 PM · Moved to git.dkfz.de, Restricted Project, MITK
floca reopened T25496: Visualize RTDOSE correctly as "Open".

As we now have preferences at the module level that can be done even in a better way. Now the mapper can set the default node settings for rendering if not already done. No need to have it handled by the reading code anymore.

May 17 2023, 5:02 PM · MITK
floca reopened T25307: Clean up remove deprecated dicom properties as "Open".
May 17 2023, 4:58 PM · Moved to git.dkfz.de, MITK
floca reopened T19711: Correct handling of RT-Properties in nodes and data as "Open".
May 17 2023, 4:57 PM · Moved to git.dkfz.de, Bugzilla, MITK
floca reopened T19711: Correct handling of RT-Properties in nodes and data, a subtask of T23746: MITK and DICOM (realization), as Open.
May 17 2023, 4:57 PM · MITK
floca reopened T22322: Changing a renderer-specific property list of a data node does not modify the data node as "Open".
May 17 2023, 4:56 PM · Moved to git.dkfz.de, MITK
floca reopened T23811: PatientViewPlugin ++, a subtask of T23754: DataStorage/Relationship clean up/refactoring, as Open.
May 17 2023, 4:55 PM · MITK
floca reopened T23811: PatientViewPlugin ++ as "Open".

I reeopened because I would like to llok into the feature branch at least and see what might be of interest:

May 17 2023, 4:55 PM · Moved to git.dkfz.de, Request for Discussion, MITK
floca reopened T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview as "Open".
May 17 2023, 4:40 PM · Missing Info, MITK
floca added a comment to T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview.

@a178n Could you verify if the problem still exist or if it is fixed?

May 17 2023, 4:38 PM · Missing Info, MITK

May 15 2023

floca added a comment to T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds.

I can now tell at least why you can paint into other windows.

May 15 2023, 8:56 PM · MITK (v2023.12), Checklist

May 13 2023

floca committed rMITK4486a4f62b3f: T29577 Fixed otsu error with multiple groups and underlying problem (label set… (authored by floca).
T29577 Fixed otsu error with multiple groups and underlying problem (label set…
May 13 2023, 6:07 PM
floca committed rMITK31c97cc08d1e: Removed unused variable (authored by floca).
Removed unused variable
May 13 2023, 6:07 PM
floca committed rMITK95d06b5200f8: Also fixed TotalSegmentator tool which would have the same problem. (authored by floca).
Also fixed TotalSegmentator tool which would have the same problem.
May 13 2023, 6:07 PM
floca closed T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups as Resolved by committing rMITK474310366223: Fixed error and underlying problem (label set cloning is not correct).
May 13 2023, 6:07 PM · Checklist, MITK (v2023.04)
floca committed rMITK474310366223: Fixed error and underlying problem (label set cloning is not correct) (authored by floca).
Fixed error and underlying problem (label set cloning is not correct)
May 13 2023, 6:07 PM

May 11 2023

floca committed rMITK08700ad1179b: Fix crash in binary threshold tools (authored by floca).
Fix crash in binary threshold tools
May 11 2023, 4:37 PM
floca committed rMITK6c078e736120: Fixed threshold tool. (authored by floca).
Fixed threshold tool.
May 11 2023, 4:36 PM
floca committed rMITK0f7115b0d645: Also fixed picking tool which has the same problem. (authored by floca).
Also fixed picking tool which has the same problem.
May 11 2023, 4:36 PM
floca closed T29575: [Segmentation] Threshold tool crashes when new label is created during preview as Resolved by committing rMITK1d634abd525d: Fix crash in binary threshold tools.
May 11 2023, 4:36 PM · Request for Discussion, Checklist, MITK (v2023.04)
floca committed rMITK1d634abd525d: Fix crash in binary threshold tools (authored by kislinsk).
Fix crash in binary threshold tools
May 11 2023, 4:36 PM

May 10 2023

floca added a revision to T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups: Unknown Object (Differential Revision).
May 10 2023, 4:14 PM · Checklist, MITK (v2023.04)

May 9 2023

floca committed rMITK4b856630dcaa: T29572 Fixed Tool_interation_multi_dpi_monitor (authored by floca).
T29572 Fixed Tool_interation_multi_dpi_monitor
May 9 2023, 9:09 PM
floca committed rMITK56c261f9b9dd: Fixed review remarks (authored by floca).
Fixed review remarks
May 9 2023, 9:09 PM
floca closed T29572: [SEG] Tool interaction does not work on multi montor setup with different dpi, a subtask of T29375: Cursor offset in 2D tools with Qt 5.15 on macOS, as Resolved.
May 9 2023, 9:09 PM · MITK (v2023.04)
floca closed T29572: [SEG] Tool interaction does not work on multi montor setup with different dpi as Resolved by committing rMITK7bf47cc93339: Fixed T29572.
May 9 2023, 9:09 PM · MITK (v2023.04)
floca committed rMITK7bf47cc93339: Fixed T29572 (authored by floca).
Fixed T29572
May 9 2023, 9:09 PM
floca claimed T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups.
May 9 2023, 9:42 AM · Checklist, MITK (v2023.04)
floca added a comment to T29590: [Segmentation] [Erase] Erasing everything of the selected label when clicking on background is surprising.

See the point and would agree. But I am biased as I never liked the feature ;).

May 9 2023, 9:41 AM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
floca raised the priority of T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups from Normal to Unbreak Now!.

Important as long as we do not know if it hints to a more fundamental underlying problem.

May 9 2023, 9:33 AM · Checklist, MITK (v2023.04)
floca moved T29575: [Segmentation] Threshold tool crashes when new label is created during preview from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:30 AM · Request for Discussion, Checklist, MITK (v2023.04)