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Apr 17 2021
Apr 17 2021
floca committed rMP43a30f4ce161: Incread version as ITK v5+ is now a hard requirement and breaking change (authored by floca).
Incread version as ITK v5+ is now a hard requirement and breaking change
Fixed identity mapper test
Updated Litmus code to work with itk v5
Fixed broken tests
floca committed rMP09b0bbac10cf: To ease the migration to v5 the deprecated itk class (authored by floca).
To ease the migration to v5 the deprecated itk class
Fixed broken code due to the switch to itk v5
floca committed rMPc8b9c21272a5: Added diagnostic output in case of failing tests (authored by floca).
Added diagnostic output in case of failing tests
Apr 15 2021
Apr 15 2021
• kleina committed rOBSHYPPOPYa340b927d14a: * Added alternative loss_function draft, that does not use a callback function. (authored by • kleina).
* Added alternative loss_function draft, that does not use a callback function.
I updated the draft in the branch directly (same file).
• kleina moved T28332: Support cascaded MPI processing from Backlog to In Progress on the Hyppopy board.
• thomass committed rRTTB377303e52d4f: include different sampling strategy based on absolute mm (authored by • thomass).
include different sampling strategy based on absolute mm
kahl moved T28437: 3D region growing may have issues when the seed point is on a pixel with value 0 from Segmentation to Cycle on the MITK (v2021.10) board.
Apr 14 2021
Apr 14 2021
Do more mutex fixes
kislinsk committed rMP7da4216a857d: MappingTaskBatch needs a more thorough migration (authored by kislinsk).
MappingTaskBatch needs a more thorough migration
kislinsk committed rMP110d8364c3b5: Fix more NULL smart pointer initializations (authored by kislinsk).
Fix more NULL smart pointer initializations
Do more enum replacements
Adapt threading-related API to ITK v5
kislinsk committed rMPad4619bd536d: [DOUBLE-CHECK THIS COMMIT] Migrate spatial objects (authored by kislinsk).
[DOUBLE-CHECK THIS COMMIT] Migrate spatial objects
kislinsk committed rMP255e513cf781: Replace unsigned long return type of GetMTime() with itk::ModifiedTimeType (authored by kislinsk).
Replace unsigned long return type of GetMTime() with itk::ModifiedTimeType
Replace itksys::String with std::string
kislinsk committed rMP0837e06d97ff: Replace vcl_ math functions with std:: math functions (authored by kislinsk).
Replace vcl_ math functions with std:: math functions
kislinsk committed rMP1a3628a9c04b: Replace ITK smart pointer NULL initialization with (implicit) nullptr… (authored by kislinsk).
Replace ITK smart pointer NULL initialization with (implicit) nullptr…
kislinsk committed rMPc733cb3de98f: Replace itk::ImageIOBase enums with itk::IO...Enum enums (authored by kislinsk).
Replace itk::ImageIOBase enums with itk::IO...Enum enums
kislinsk committed rMPeb6be9df7d3f: Replace itk::LoggerBase::PriorityLevelType with itk::LoggerBaseEnums… (authored by kislinsk).
Replace itk::LoggerBase::PriorityLevelType with itk::LoggerBaseEnums…
Replace ITK mutexes with std mutexes
a178n edited projects for T28354: Update MITK documentation on CMAKE build for plugins, added: MITK (v2021.10), Next Milestone; removed Missing Info, Restricted Project.
Unassign myself because we removed the clipping plane from the release and have not discussed yet how to further proceed.
• thomass updated subscribers of T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior.
The first user feedback of the patch above was positive, the users liked the behavior.
However, the patch did not work correctly in terms of modifying the points afterwards (users were warned before).
floca moved T28446: Migrate MatchPoint to ITK v5.1 from Backlog to Cycle on the MITK (v2021.10) board.
@kislinsk thanks for taking over. The WIP stuff I put on github still could be useful, see comment above. let me know if I can help.
Apr 12 2021
Apr 12 2021
floca moved T28439: [Segmentation] Support custom background/outside values in image masking from Segmentation to Cycle on the MITK (v2021.10) board.
floca moved T28422: Multilabel color map does not produce unique colors from Segmentation to Cycle on the MITK (v2021.10) board.
floca moved T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem from Backlog to Segmentation on the MITK (v2021.10) board.
floca edited projects for T27637: [Segmentation] Multilabel label name dialog on label creation is a UX problem, added: MITK (v2021.10); removed MITK.
floca moved T28144: CorrectorTool does not properly handle unlocked lables of LabelSet Images from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T28144: CorrectorTool does not properly handle unlocked lables of LabelSet Images from Backlog to MITK Meeting on the Request for Discussion board.
floca added a comment to T28144: CorrectorTool does not properly handle unlocked lables of LabelSet Images.
We should discuss if we should not deprecate the old CorrectorTool completly because of several issues and because it adds only very small value to using add/substract with hotkeys directly.
floca edited projects for T28144: CorrectorTool does not properly handle unlocked lables of LabelSet Images, added: MITK (v2021.10), Request for Discussion; removed MITK.
floca edited projects for T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures., added: MITK (v2021.10); removed MITK.
floca added a project to T28259: Refactor the usage of QmitkSliceNavigationListener: Next Milestone.
floca committed rRTTB66d35bc657a1: Fixed linking errors for MutableDoseAccessorInterface (authored by floca).
Fixed linking errors for MutableDoseAccessorInterface
Fixed dependencies of tests to TestHelper
kislinsk edited projects for T27437: Migrate MITK to use ITK 5.x , added: MITK (v2021.10); removed MITK.
Apr 11 2021
Apr 11 2021
• thomass committed rRTTB051dec8f7167: try to make the test build work again wip (authored by • thomass).
try to make the test build work again wip
• thomass committed rRTTBac212ba954f6: uncommented test snippet for now because not complete (authored by • thomass).
uncommented test snippet for now because not complete
• thomass committed rRTTBaf580ef73263: Merge branch 'master' into feature/T27843-Add_gamma_index_to_RTTB (authored by • thomass).
Merge branch 'master' into feature/T27843-Add_gamma_index_to_RTTB
• thomass committed rRTTBfe1e1968a7fc: fix for doseThreshold based on measuredDose instead of referenceDose (authored by • thomass).
fix for doseThreshold based on measuredDose instead of referenceDose
Apr 9 2021
Apr 9 2021
floca moved T27149: [Segmentation] Interpolation nodes / position nodes are not correctly hidden from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T25192: Enable DICOM SEG conversion for nrrd segmentations from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T27720: mitkPackageTest fails on Windows Nightlies from Backlog to Tests/Checklists on the MITK (v2021.10) board.
floca moved T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T28256: [Segmentation] Auto-selection preference was hijacked for something else from Backlog to Segmentation on the MITK (v2021.10) board.
floca edited projects for T27720: mitkPackageTest fails on Windows Nightlies, added: MITK (v2021.10); removed Next Milestone, MITK.
floca edited projects for T27149: [Segmentation] Interpolation nodes / position nodes are not correctly hidden, added: MITK (v2021.10); removed Next Milestone, MITK.
floca edited projects for T25192: Enable DICOM SEG conversion for nrrd segmentations, added: MITK (v2021.10); removed MITK, Next Milestone.
floca edited projects for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG, added: MITK (v2021.10); removed MITK, Next Milestone.
floca edited projects for T28131: [MultiLabel Segmentation] 3D Threshold tool does not work with multiple labels / layers, added: MITK (v2021.10); removed Next Milestone, MITK.
floca edited projects for T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view, added: MITK (v2021.10); removed Next Milestone, MITK.
floca edited projects for T28135: [MultiLabel Segmentation] Utilities view cannot handle non-binary multilabel segmentations, added: MITK (v2021.10); removed Next Milestone, MITK.
floca edited projects for T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View, added: MITK (v2021.10); removed Next Milestone, MITK.
floca edited projects for T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage, added: MITK (v2021.10), Request for Discussion; removed Next Milestone, MITK.
floca edited projects for T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems, added: MITK (v2021.10), Request for Discussion; removed Next Milestone, MITK.
floca edited projects for T28256: [Segmentation] Auto-selection preference was hijacked for something else, added: MITK (v2021.10); removed Next Milestone, MITK.
floca edited projects for T28217: [MatchPoint] Registrations generated with manipulator have no proper PropertyReleations, added: MITK (v2021.10); removed Next Milestone, MITK.
floca moved T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry from Backlog to Tests/Checklists on the MITK (v2021.10) board.
floca moved T25445: MultiLabel segmentation mapper is very slow from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T26485: [Segmentation] PACS mode is active while segmentation is drawn from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T26972: Dialog and plugin layout seems to be not shown correctly on laptops from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T27458: Activate Test also for arc diff builds to avoid missed unit test errors from Backlog to Tests/Checklists on the MITK (v2021.10) board.
floca moved T27571: Multilabel segmentation does not work with US DICOM images from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T28176: [Segmentation] Inspection of module and plugin from Backlog to Segmentation on the MITK (v2021.10) board.
floca moved T28248: [Segmentation] Picking 3D Tool creates a 3D segmentation out of a 4D image from Backlog to Cycle on the MITK (v2021.10) board.
floca edited projects for T28248: [Segmentation] Picking 3D Tool creates a 3D segmentation out of a 4D image, added: MITK (v2021.10); removed Next Milestone, MITK.
floca edited projects for T28297: Add Stitching MiniApp to installer, added: MITK (v2021.10), Restricted Project; removed Next Milestone, MITK.
floca edited projects for T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation, added: MITK (v2021.10); removed Next Milestone, MITK.
floca edited projects for T28206: [Image Statistics] Renaming segmentation or planar figure based ROI nodes breaks histogram, added: MITK (v2021.10); removed Next Milestone, MITK.