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Jun 15 2021

floca renamed T28549: Remove deprecated functions from classes involved in the LabelSetImage refactoring from Remove deprecated functions from classes involved in the LabelSetImge refactoring to Remove deprecated functions from classes involved in the LabelSetImage refactoring.
Jun 15 2021, 8:50 AM · MITK (v2021.10)
floca triaged T28549: Remove deprecated functions from classes involved in the LabelSetImage refactoring as Normal priority.
Jun 15 2021, 8:50 AM · MITK (v2021.10)

Jun 14 2021

• kleina triaged T28548: Allow Zooming during creation of Segmentation. as Normal priority.
Jun 14 2021, 4:51 PM · MITK (v2023.12), Request for Discussion

Jun 13 2021

floca updated subscribers of T28525: Design refactoring of LabelSetImage and associated classes.
Jun 13 2021, 2:25 PM · Next Milestone

Jun 11 2021

kislinsk closed T28546: Fix macOS CI builds as Resolved.
Jun 11 2021, 3:50 PM · CI, MITK
kislinsk added a comment to T28546: Fix macOS CI builds.

Deleted branch from rMITK MITK: bugfix/T28546-macOSCatalina.

Jun 11 2021, 3:49 PM · CI, MITK
kislinsk committed rMITK68699eab4fb3: Do not build SWIG and PCRE on macOS anymore (authored by kislinsk).
Do not build SWIG and PCRE on macOS anymore
Jun 11 2021, 3:48 PM
kislinsk committed rMITK9eb477901e8e: Fix regex for extraction of macOS codename (authored by kislinsk).
Fix regex for extraction of macOS codename
Jun 11 2021, 3:48 PM
kislinsk committed rMITKa0fecae44195: Merge branch 'bugfix/T28546-macOSCatalina' into develop (authored by kislinsk).
Merge branch 'bugfix/T28546-macOSCatalina' into develop
Jun 11 2021, 3:48 PM
kislinsk added a comment to T28546: Fix macOS CI builds.

Pushed new branch to rMITK MITK: bugfix/T28546-macOSCatalina.

Jun 11 2021, 3:48 PM · CI, MITK
kislinsk added a comment to T28546: Fix macOS CI builds.
  • For now I will disable SWIG (and PCRE) builds on macOS and require it to be provided (for example via Homebrew brew install swig).
  • I already renamed everything in Jenkins, Phabricator, and Git hooks
  • The macOS codename extraction can be easily fixed adding the backslash to the extraction regex
Jun 11 2021, 3:41 PM · CI, MITK
kislinsk triaged T28546: Fix macOS CI builds as Unbreak Now! priority.
Jun 11 2021, 3:37 PM · CI, MITK
s669m updated the task description for T28541: Roadmap and TODO using Kata Container.
Jun 11 2021, 10:11 AM · Restricted Project

Jun 10 2021

• kleina added a comment to T28544: Difference of loading RT data DicomBrowser vs. "Standard loading".

We commented out the entire if-else clause for the RT data and it seems to do what it is supposed to do, even without the special conditions. Need to check that in more detail.

Jun 10 2021, 4:35 PM · MITK (v2024.06), Request for Discussion
• kleina removed a project from T28455: RT struct 3D visibility is not working correctly: Request for Discussion.
Jun 10 2021, 3:36 PM · MITK (v2021.10)
• kleina triaged T28544: Difference of loading RT data DicomBrowser vs. "Standard loading" as Normal priority.
Jun 10 2021, 2:45 PM · MITK (v2024.06), Request for Discussion
floca added a comment to T27665: PlanarFigure tests show error with DICOMTagsOfInterestAddHelper.
In T27665#224913, @kalali wrote:

@floca I can't reproduce this anymore. However, I'm not sure where some changes were done. Do you have an idea?

Jun 10 2021, 2:41 PM · Auto-closed, Restricted Project, MITK
floca added a comment to T27133: [Segmentation] Is QmitkDataSelectionWidget needed anymore?.

The QmitkDataSelectionWidget uses the new selection concept widget SingleNodeSelectionWidget. So it is not redundant per se.
But it is right that it makes no sense to dublicate the widget in the plugins. It should be in MitkSegmentationUI and only one time.

Jun 10 2021, 2:35 PM · MITK (v2024.06)
• kleina added a comment to T28455: RT struct 3D visibility is not working correctly.

Pushed new branch to rMITK MITK: bugfix/T28455-rt-struct-3d-visibility.

Jun 10 2021, 2:32 PM · MITK (v2021.10)
kalali closed T26878: Opacity / transparency of a data node cannot be changed anymore as Resolved.

I will close this for now as the issue cannot be reproduced.

Jun 10 2021, 2:20 PM · MITK
kalali added a subtask for T28176: [Segmentation] Inspection of module and plugin: T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary".
Jun 10 2021, 2:17 PM · MITK (v2024.06)
kalali added a parent task for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary": T28176: [Segmentation] Inspection of module and plugin.
Jun 10 2021, 2:17 PM · MITK (v2024.06), Checklist, Request for Discussion
kalali renamed T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from Newly created LabelSet segmentation is not displayed as "outline binary" to [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary".
Jun 10 2021, 2:16 PM · MITK (v2024.06), Checklist, Request for Discussion
kalali moved T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from Backlog to Segmentation on the MITK (v2021.10) board.
Jun 10 2021, 2:16 PM · MITK (v2024.06), Checklist, Request for Discussion
kalali edited projects for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary", added: MITK (v2021.10); removed MITK.
Jun 10 2021, 2:16 PM · MITK (v2024.06), Checklist, Request for Discussion
kalali moved T27133: [Segmentation] Is QmitkDataSelectionWidget needed anymore? from Backlog to Segmentation on the MITK (v2021.10) board.
Jun 10 2021, 2:12 PM · MITK (v2024.06)
kalali renamed T27133: [Segmentation] Is QmitkDataSelectionWidget needed anymore? from Is QmitkDataSelectionWidget needed anymore? to [Segmentation] Is QmitkDataSelectionWidget needed anymore?.
Jun 10 2021, 2:12 PM · MITK (v2024.06)
kalali edited projects for T27133: [Segmentation] Is QmitkDataSelectionWidget needed anymore?, added: MITK (v2021.10); removed MITK.
Jun 10 2021, 2:11 PM · MITK (v2024.06)
kalali moved T27154: Define clean workflow for segmentation copying from Backlog to Segmentation on the MITK (v2021.10) board.
Jun 10 2021, 2:10 PM · MITK (v2024.06)
kalali moved T27154: Define clean workflow for segmentation copying from Backlog to MITK Meeting on the Request for Discussion board.

No further work has been done here but I would like to keep this topic in mind when refactoring the segmentation modules.

Jun 10 2021, 2:10 PM · MITK (v2024.06)
kalali added a comment to T27665: PlanarFigure tests show error with DICOMTagsOfInterestAddHelper.

@floca I can't reproduce this anymore. However, I'm not sure where some changes were done. Do you have an idea?

Jun 10 2021, 2:07 PM · Auto-closed, Restricted Project, MITK
kalali edited projects for T25804: [Selection concept] Set 'selected' property when using the new selection concept, added: MITK (v2021.10); removed MITK.
Jun 10 2021, 1:29 PM · MITK (v2024.06), Request for Discussion
kalali edited projects for T24738: [Selection concept] Thumbnail preview of images for datastorage inspectors, added: MITK (v2021.10); removed MITK.
Jun 10 2021, 1:27 PM · MITK (v2024.06), Restricted Project
kalali edited projects for T28315: [Selection concept] Provide preference page option to show / hide helper nodes, added: MITK (v2021.10); removed MITK.
Jun 10 2021, 1:25 PM · Request for Discussion, MITK (v2021.10)

Jun 9 2021

s669m updated the task description for T28541: Roadmap and TODO using Kata Container.
Jun 9 2021, 10:12 AM · Restricted Project
s669m updated the task description for T28541: Roadmap and TODO using Kata Container.
Jun 9 2021, 10:10 AM · Restricted Project
s669m triaged T28541: Roadmap and TODO using Kata Container as High priority.
Jun 9 2021, 10:09 AM · Restricted Project
s669m closed T28382: Testing Kata and Gvisor on Local as Resolved.

changing the status to Resolved Since Kata is successfully tested in the first stage.

Jun 9 2021, 10:02 AM · Restricted Project
s669m updated subscribers of T28382: Testing Kata and Gvisor on Local .
Jun 9 2021, 10:01 AM · Restricted Project
s669m closed T28351: Trial Run with Kata Isolated Container, a subtask of T28175: TFDA MVP v1, as Resolved.
Jun 9 2021, 10:00 AM · Restricted Project
s669m closed T28351: Trial Run with Kata Isolated Container as Resolved.

Managed to run a test run with nginx server in a normal environment and Kata environment with two different kernels, so it is possible to create a diff kernel using Kata

Jun 9 2021, 10:00 AM · Restricted Project
s669m updated subscribers of T28351: Trial Run with Kata Isolated Container.
Jun 9 2021, 9:59 AM · Restricted Project
floca added a comment to T28525: Design refactoring of LabelSetImage and associated classes.

Pushed new branch to rMITK MITK: feature/T28525-Design_refactoring_labelset.

Jun 9 2021, 8:41 AM · Next Milestone

Jun 8 2021

nolden moved T28529: Replace Elasticsearch and Kibana with apache-licensed opensearch from Backlog to Discussion on the Kaapana (internal) board.
Jun 8 2021, 11:09 AM · Request for Discussion, Kaapana (internal)
nolden triaged T28529: Replace Elasticsearch and Kibana with apache-licensed opensearch as Normal priority.
Jun 8 2021, 11:08 AM · Request for Discussion, Kaapana (internal)
• kleina committed rOBSHYPPOPYd59c6efb638f: Usage of default value for new member. (authored by • kleina).
Usage of default value for new member.
Jun 8 2021, 9:48 AM
floca removed a project from T26427: Support software rendering: Next Milestone.

Update regarding the problem of @tpenzkofer (Software Rendering with VMWare VMs):
After the update to the newest VMWare version, the software rendering works correctly also with newer MITK versions. It seems like the new VMWare version has its own Mesa driver with OpenGL 3.3 support wich does the trick.

Jun 8 2021, 8:21 AM · Auto-closed, MITK

Jun 7 2021

floca added a project to T26427: Support software rendering: Next Milestone.
Jun 7 2021, 6:53 PM · Auto-closed, MITK
• kleina committed rOBSHYPPOPYb8dfe382dd47: Added .arcconfig for Hyppopy (authored by • kleina).
Added .arcconfig for Hyppopy
Jun 7 2021, 4:22 PM
• kleina committed rOBSHYPPOPY4de04affc17e: Added test for setting of default value for _add_member (authored by • kleina).
Added test for setting of default value for _add_member
Jun 7 2021, 4:22 PM
• kleina committed rOBSHYPPOPY019b7655537b: If the passed value for a new member equals 'None', (authored by • kleina).
If the passed value for a new member equals 'None',
Jun 7 2021, 4:22 PM
• kleina moved T28300: [MPI] MPI as a general dependency might be problematic from In Progress to Bugfixes on the Hyppopy board.
Jun 7 2021, 3:08 PM · Request for Discussion, Hyppopy
a178n closed T28354: Update MITK documentation on CMAKE build for plugins as Resolved.
Jun 7 2021, 12:14 PM · Next Milestone, MITK (v2021.10)
a178n committed rMITK3ba83dab9cb8: Update Cmake FAQ in plugins (authored by a178n).
Update Cmake FAQ in plugins
Jun 7 2021, 12:08 PM
a178n committed rMITK8d52be146e96: update (authored by a178n).
update
Jun 7 2021, 12:08 PM
a178n committed rMITK792f2d494aa8: D489 review fixes (authored by a178n).
D489 review fixes
Jun 7 2021, 12:08 PM
a178n committed rMITK39f0e7f533f7: D489 revision update (authored by a178n).
D489 revision update
Jun 7 2021, 12:08 PM
a178n committed rMITK7f30b5b45cee: Update Cmake FAQ in plugins (authored by a178n).
Update Cmake FAQ in plugins
Jun 7 2021, 12:07 PM
floca added a comment to T26427: Support software rendering.

I think Stefan is refering to that https://developer.nvidia.com/designworks, arn't you @kislinsk ?

Jun 7 2021, 10:35 AM · Auto-closed, MITK
floca raised the priority of T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View from High to Unbreak Now!.
Jun 7 2021, 9:16 AM · MITK (v2023.04), Restricted Project
floca added a subtask for T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation: T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.
Jun 7 2021, 9:14 AM · MITK (v2022.04), Breaking Change
floca added a parent task for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
Jun 7 2021, 9:14 AM · MITK (v2023.04), Restricted Project
floca moved T28516: 2D slice interpolation should use multiprocessing from Backlog to Segmentation on the MITK (v2021.10) board.
Jun 7 2021, 9:13 AM · MITK (v2021.10)
floca triaged T28516: 2D slice interpolation should use multiprocessing as Normal priority.
Jun 7 2021, 9:13 AM · MITK (v2021.10)
floca lowered the priority of T28385: [Segmentation] Erosion crashes the MITK Workbench after interpolation from High to Normal.

Does it only crash with erosion or also with other utilities?

Jun 7 2021, 9:11 AM · Cleared, MITK (v2021.10)
floca edited projects for T28385: [Segmentation] Erosion crashes the MITK Workbench after interpolation, added: MITK (v2021.10); removed MITK.
Jun 7 2021, 9:10 AM · Cleared, MITK (v2021.10)
floca moved T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label from Backlog to Segmentation on the MITK (v2021.10) board.
Jun 7 2021, 9:08 AM · MITK (v2023.04)
floca edited projects for T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label , added: MITK (v2021.10); removed MITK.
Jun 7 2021, 9:08 AM · MITK (v2023.04)
floca moved T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View from Backlog to Segmentation on the MITK (v2021.10) board.
Jun 7 2021, 9:08 AM · MITK (v2023.04), Restricted Project
floca added a parent task for T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label : T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.
Jun 7 2021, 9:07 AM · MITK (v2023.04)
floca added a subtask for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label .
Jun 7 2021, 9:07 AM · MITK (v2023.04), Restricted Project
floca edited projects for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View, added: MITK (v2021.10); removed MITK.
Jun 7 2021, 9:07 AM · MITK (v2023.04), Restricted Project

Jun 6 2021

floca claimed T28525: Design refactoring of LabelSetImage and associated classes.
Jun 6 2021, 8:27 PM · Next Milestone
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Segmentation to Cycle on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2024.06)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Segmentation to Cycle on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2024.06)
floca moved T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox from Segmentation to Cycle on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2022.10), Cleared
floca moved T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction from Segmentation to Cycle on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2024.06)
floca moved T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox from Cycle to Segmentation on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2022.10), Cleared
floca moved T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction from Cycle to Segmentation on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2024.06)
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Cycle to Segmentation on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2024.06)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Cycle to Segmentation on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2024.06)

Jun 4 2021

floca added a subtask for T28131: [MultiLabel Segmentation] 3D Threshold tool does not work with multiple labels / layers: T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage.
Jun 4 2021, 7:38 PM · Request for Discussion, MITK (v2022.04)
floca added a parent task for T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage: T28131: [MultiLabel Segmentation] 3D Threshold tool does not work with multiple labels / layers.
Jun 4 2021, 7:38 PM · Next Milestone, MITK
floca added a subtask for T28176: [Segmentation] Inspection of module and plugin: T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage.
Jun 4 2021, 7:37 PM · MITK (v2024.06)
floca added a parent task for T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage: T28176: [Segmentation] Inspection of module and plugin.
Jun 4 2021, 7:37 PM · Next Milestone, MITK
floca added a subtask for T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage: T28524: Refactor LabelSetImage and associated classes..
Jun 4 2021, 7:36 PM · Next Milestone, MITK
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage.
Jun 4 2021, 7:36 PM · Next Milestone
floca triaged T28526: [Segmentation] Check tools (especially 3D tools) to correctly handle updating of LabelSetImage as High priority.
Jun 4 2021, 7:36 PM · Next Milestone, MITK
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations.
Jun 4 2021, 7:16 PM · Next Milestone
floca added a subtask for T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations: T28524: Refactor LabelSetImage and associated classes..
Jun 4 2021, 7:16 PM · MITK (v2024.06), Missing Info
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Backlog to Cycle on the MITK (v2021.10) board.
Jun 4 2021, 7:14 PM · MITK (v2024.06)
floca moved T28525: Design refactoring of LabelSetImage and associated classes from Backlog to Cycle on the MITK (v2021.10) board.
Jun 4 2021, 7:13 PM · Next Milestone
floca moved T28524: Refactor LabelSetImage and associated classes. from Backlog to Segmentation on the MITK (v2021.10) board.
Jun 4 2021, 7:13 PM · Next Milestone
floca added a subtask for T28131: [MultiLabel Segmentation] 3D Threshold tool does not work with multiple labels / layers: T28524: Refactor LabelSetImage and associated classes..
Jun 4 2021, 7:11 PM · Request for Discussion, MITK (v2022.04)
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T28131: [MultiLabel Segmentation] 3D Threshold tool does not work with multiple labels / layers.
Jun 4 2021, 7:11 PM · Next Milestone
floca added a parent task for T28524: Refactor LabelSetImage and associated classes.: T8140: Reimplement volume annotations for segmentations.
Jun 4 2021, 7:11 PM · Next Milestone
floca added a subtask for T8140: Reimplement volume annotations for segmentations: T28524: Refactor LabelSetImage and associated classes..
Jun 4 2021, 7:11 PM · MITK (v2024.06), Request for Discussion, Bugzilla
floca added subtasks for T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep: T28523: Evaluate MITK segmentation survey, T28524: Refactor LabelSetImage and associated classes., T27437: Migrate MITK to use ITK 5.x .
Jun 4 2021, 7:09 PM · MITK (v2024.06)
floca added a parent task for T28523: Evaluate MITK segmentation survey: T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep.
Jun 4 2021, 7:09 PM · MITK (v2021.10)
floca added a parent task for T27437: Migrate MITK to use ITK 5.x : T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep.
Jun 4 2021, 7:09 PM · MITK-ProjectTemplate, MITK (v2022.04)
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