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May 12 2022

floca edited projects for T24398: Dicom plugin: Retrieve does not work, added: MITK (v2022.10), Missing Info; removed MITK, Next Milestone.

still valid?

May 12 2022, 5:33 PM · MITK (v2024.06)
floca edited projects for T27578: 2021.1 Linux installer does not work on Fedora, added: MITK (v2022.10); removed MITK.
May 12 2022, 5:31 PM · MITK (v2022.10)
floca edited projects for T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 5:28 PM · MITK (v2022.10), Cleared, Restricted Project
kalali edited projects for T29140: [Selection widget] Optional selection can not be removed if a fitting node is always found, added: MITK (v2022.10); removed Next Milestone, MITK.
May 12 2022, 5:17 PM · MITK (v2024.06), Request for Discussion
kalali moved T29110: [Segmentation] Optimize new segmentation view from Segmentation to Cycle on the MITK (v2022.10) board.
May 12 2022, 5:16 PM · MITK (v2022.10)
kalali moved T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" from Backlog to Cycle on the MITK (v2022.10) board.
May 12 2022, 5:16 PM · MITK (v2024.06), Checklist, Request for Discussion
kalali moved T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 5:15 PM · MITK (v2024.06)
kalali edited projects for T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems, added: MITK (v2022.10); removed Next Milestone, MITK.
May 12 2022, 5:15 PM · MITK (v2024.06)
aekavur added a comment to T29167: [dash] Bars and dots don't match in podium plot.

Update: I go deeper with debugging and some reverse engineering. The source of the problem is the miss-ranking of the algorithms. When we use testThenRank and rankThenAggregate methods, the ranking of the algorithms seems wrong, as it is seen on the screenshot (marked with red rectangular). There is no problem with aggregateThenRank method so far.

May 12 2022, 5:15 PM · challengeR, webChallengeR
isensee added a comment to T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations.

Just had a talk with @kalali :

  • yes loading is a problem, I don't know whether that was also a problem back then. The multilabel segmentation utilities does not allow to select multilabel images
  • the main problem still persists: I cannot select a layer and a label that I want to modify with the plugin (this selection needs to be possible for all selected label images). In this particular case I wanted to add a small fraction of label_image_2_layer1_label1 to label_image_1_layer1_label1 using the 'union' tool

@kalali told me that adding this functionality seems to be already on your (Stefans?) todo list, so everything is great :-)
From my side there is absolutely no time pressure to solve this as we were able to run the required steps with a simple python script instead

May 12 2022, 3:55 PM · MITK (v2024.06), Missing Info
kalali added a comment to T25753: Some refactoring of the selection classes.

Deleted branch from rMITK MITK: T25753-Refactor-selection-concept-classes.

May 12 2022, 1:23 PM · MITK
kalali added a comment to T27028: Add selection condition check for multi-node selection.

Deleted branch from rMITK MITK: T27028-Add-selection-condition.

May 12 2022, 1:22 PM · MITK
kalali added a comment to T27002: Refactor DICOM inspector plugin to use the new node selection widgets.

Deleted branch from rMITK MITK: T27002-DICOM-inspector-view-with-single-node-selection-widget.

May 12 2022, 1:20 PM · MITK
kompan moved T27142: Unit test for average baseline signal from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 1:20 PM · MITK, Restricted Project
kompan edited projects for T27142: Unit test for average baseline signal, added: MITK (v2022.10); removed MITK.
May 12 2022, 1:19 PM · MITK, Restricted Project
kalali added a comment to T26475: QmitkPropertyTreeView does not react on DICOM node changes.

Deleted branch from rMITK MITK: T26475-Remove-node-change-reaction.

May 12 2022, 1:19 PM · Restricted Project, MITK
kalali added a comment to T26998: Refactor Properties plugin to use the new node selection widgets.

Deleted branch from rMITK MITK: T26998-Properties-view-with-single-node-selection-widget.

May 12 2022, 1:14 PM · MITK
kalali added a comment to T24659: Implement "Favorites" inspector.

Deleted branch from rMITK MITK: T24659-Implement-favorites-inspector.

May 12 2022, 1:12 PM · MITK
kalali added a comment to T24358: Rework QmitkMouseModeSwitcher.

Deleted branch from rMITK MITK: T24358-Remove-QmitkMouseModeSwitcher.

May 12 2022, 1:08 PM · MITK
kalali added a comment to T24357: Rework mitkMouseModeSwitcher.

Deleted branch from rMITK MITK: T24357-Remove-MouseModeSwitcher.

May 12 2022, 1:04 PM · MITK
kalali moved T18414: Context menu item search behaves differently for single selection vs multiple selection from Backlog to mxn MultiWidget on the MITK (v2022.10) board.
May 12 2022, 12:24 PM · MITK (v2024.06)
kalali reopened T18414: Context menu item search behaves differently for single selection vs multiple selection as "Open".
May 12 2022, 12:23 PM · MITK (v2024.06)
kalali reopened T18414: Context menu item search behaves differently for single selection vs multiple selection, a subtask of T25056: Refactor data manager context menu, as Open.
May 12 2022, 12:23 PM · MITK (v2024.06), Noteworthy
kalali moved T25725: "Show in" action is currently not implemented from Backlog to mxn MultiWidget on the MITK (v2022.10) board.
May 12 2022, 12:22 PM · MITK (v2022.10)
kalali reopened T25725: "Show in" action is currently not implemented as "Open".
May 12 2022, 12:22 PM · MITK (v2022.10)
kalali reopened T25725: "Show in" action is currently not implemented, a subtask of T25056: Refactor data manager context menu, as Open.
May 12 2022, 12:22 PM · MITK (v2024.06), Noteworthy
kislinsk moved T28207: MITK DicomBrowser q/r Retrieve part crash from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:21 AM · MITK, Checklist
kislinsk moved T28607: [Segmentation] LiveWire tool issues and improvements from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:21 AM · MITK (v2022.10), Cleared, Checklist
kislinsk moved T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:21 AM · Request for Discussion, MITK (v2022.10), Checklist
kislinsk moved T28776: Perfusion DataFit View: Inconsistencies in the signal conversion using the turboFLASH sequence from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:21 AM · MITK (v2024.06), Checklist
kislinsk moved T28778: "Use constraint zooming and panning" is only applied after reinit/restart from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:21 AM · MITK, Checklist
kislinsk moved T28779: Saving projects with Umlauts uses wrong encoding for file name from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2022.10), Checklist
kislinsk moved T28781: Selected series and studies cannot be deleted from DICOM browser without deleting the whole patient from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK, Checklist
kislinsk moved T28782: Scanning directories in DICOM Browser -> Import only works once from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK, Checklist
kislinsk moved T28785: Levelwindow UX proposals/comments from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2024.06), Checklist, Missing Info, Request for Discussion
kislinsk moved T28791: [Segmentation][Multilabel][Options]"Create polygon model" issues for large images from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2024.06), Checklist
kislinsk moved T28793: [Segmentation][Multilabel][Options] Changing only decimation rate has no visible effect in "Create smoothed polygon model" from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · Cleared, MITK (v2022.10), Checklist
kislinsk moved T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2024.06), Checklist
kislinsk moved T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2024.06), Checklist
kislinsk moved T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2024.06), Checklist
kislinsk moved T28800: [Segmentation] Threshold tool updates after each digit if typed in manually from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2023.12), Checklist, Request for Discussion
kislinsk moved T28801: [MultiLabel Segmentation][Utilities] Exception thrown when converting to MultiLabel from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2022.10), Checklist
kislinsk moved T28803: [Properties] Fine-tune selection widget from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK, Checklist
kislinsk moved T28808: [Properties] Some Pointset 2D shape selection not shown in the image views from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2022.10)
kislinsk moved T28815: [Segmentation] Segmentation is still rendered after "clear" was clicked from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2022.10), Checklist
kislinsk moved T28816: [Segmentation] "New Segmentation" dialog to small from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2023.04), Cleared, Restricted Project, Checklist
kislinsk moved T29060: [Segmentation] Glitch in label color after 3d-interpolation from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2023.04), Checklist
kislinsk moved T29076: [Segmentation] Pressing DEL should delete a label from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2024.06), Checklist
kislinsk moved T29078: [Segmentation] Erase tool has unclear edge cases from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · Next Milestone, Checklist
kislinsk moved T29090: [3D Segmentation] Threshold tool preview draws contours in green and not in the active label color. from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk moved T29093: [Image Cropper] Warning of rotated geometry not removed after reinit from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2022.10), Checklist
kislinsk moved T29094: Deleting a data node causes global reset from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK, Checklist
kislinsk moved T29095: [Image Cropper] Moving of the bounding box can not be undone from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK, Checklist
kislinsk moved T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range? from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK (v2024.06), Restricted Project, Checklist
kislinsk moved T29101: [3D Segmentation] Region Growing Tool - Generated Segmentation darkens the ambient image from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:20 AM · MITK, Checklist
kislinsk moved T29106: [Segmentation Options] "show only selected nodes" is not immediately applied from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk moved T29141: [Segmentation] Color change not immediately applied from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk moved T29142: [Segmentation] Previews stay invisible if label was hidden from Backlog to Tests/Checklists on the MITK (v2022.10) board.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk edited projects for T29095: [Image Cropper] Moving of the bounding box can not be undone, added: MITK (v2022.10); removed Next Milestone, MITK.
May 12 2022, 11:19 AM · MITK, Checklist
kislinsk edited projects for T29076: [Segmentation] Pressing DEL should delete a label, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28778: "Use constraint zooming and panning" is only applied after reinit/restart, added: MITK (v2022.10); removed Next Milestone, MITK.
May 12 2022, 11:19 AM · MITK, Checklist
kislinsk edited projects for T28800: [Segmentation] Threshold tool updates after each digit if typed in manually, added: MITK (v2022.10); removed Next Milestone, MITK.
May 12 2022, 11:19 AM · MITK (v2023.12), Checklist, Request for Discussion
kislinsk edited projects for T29090: [3D Segmentation] Threshold tool preview draws contours in green and not in the active label color. , added: MITK (v2022.10); removed Next Milestone, MITK.
May 12 2022, 11:19 AM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk edited projects for T28815: [Segmentation] Segmentation is still rendered after "clear" was clicked, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk edited projects for T28803: [Properties] Fine-tune selection widget, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK, Checklist
kislinsk edited projects for T28816: [Segmentation] "New Segmentation" dialog to small, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2023.04), Cleared, Restricted Project, Checklist
kislinsk edited projects for T29106: [Segmentation Options] "show only selected nodes" is not immediately applied, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk edited projects for T29141: [Segmentation] Color change not immediately applied, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk edited projects for T29101: [3D Segmentation] Region Growing Tool - Generated Segmentation darkens the ambient image, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK, Checklist
kislinsk edited projects for T29093: [Image Cropper] Warning of rotated geometry not removed after reinit, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk edited projects for T29142: [Segmentation] Previews stay invisible if label was hidden, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk edited projects for T28607: [Segmentation] LiveWire tool issues and improvements, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK (v2022.10), Cleared, Checklist
kislinsk edited projects for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary", added: MITK (v2022.10); removed Next Milestone, MITK.
May 12 2022, 11:19 AM · MITK (v2024.06), Checklist, Request for Discussion
kislinsk edited projects for T28776: Perfusion DataFit View: Inconsistencies in the signal conversion using the turboFLASH sequence , added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28781: Selected series and studies cannot be deleted from DICOM browser without deleting the whole patient, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK, Checklist
kislinsk edited projects for T28779: Saving projects with Umlauts uses wrong encoding for file name, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk edited projects for T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · Request for Discussion, MITK (v2022.10), Checklist
kislinsk edited projects for T28785: Levelwindow UX proposals/comments, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2024.06), Checklist, Missing Info, Request for Discussion
kislinsk edited projects for T28791: [Segmentation][Multilabel][Options]"Create polygon model" issues for large images, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28782: Scanning directories in DICOM Browser -> Import only works once, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK, Checklist
kislinsk edited projects for T28793: [Segmentation][Multilabel][Options] Changing only decimation rate has no visible effect in "Create smoothed polygon model", added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · Cleared, MITK (v2022.10), Checklist
kislinsk edited projects for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28808: [Properties] Some Pointset 2D shape selection not shown in the image views, added: MITK (v2022.10); removed MITK.
May 12 2022, 11:19 AM · MITK (v2022.10)
kislinsk edited projects for T28801: [MultiLabel Segmentation][Utilities] Exception thrown when converting to MultiLabel, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK (v2022.10), Checklist
kislinsk edited projects for T29060: [Segmentation] Glitch in label color after 3d-interpolation, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK (v2023.04), Checklist
kislinsk edited projects for T29078: [Segmentation] Erase tool has unclear edge cases, added: MITK (v2022.10); removed Next Milestone, MITK.
May 12 2022, 11:19 AM · Next Milestone, Checklist
kislinsk edited projects for T29094: Deleting a data node causes global reset, added: MITK (v2022.10); removed Next Milestone, MITK.
May 12 2022, 11:19 AM · MITK, Checklist
kislinsk edited projects for T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range?, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK (v2024.06), Restricted Project, Checklist
kislinsk edited projects for T28207: MITK DicomBrowser q/r Retrieve part crash, added: MITK (v2022.10); removed MITK, Next Milestone.
May 12 2022, 11:19 AM · MITK, Checklist
floca moved T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 11:08 AM · MITK (v2024.06)
floca moved T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 11:08 AM · MITK (v2022.10), Cleared
floca moved T28264: [Segmentation Utilities] Various issues from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 11:08 AM · MITK (v2024.06), Cleared
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 11:08 AM · MITK (v2024.06)
floca moved T28491: [Segmentation] Slice interpolation 'confirm for all slices' sometimes crahes from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 11:08 AM · MITK (v2023.12)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 11:08 AM · MITK (v2024.06)
floca moved T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 11:08 AM · MITK (v2024.06), Missing Info
floca moved T28524: Refactor LabelSetImage and associated classes. from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 11:07 AM · Next Milestone
floca moved T28525: Design refactoring of LabelSetImage and associated classes from Backlog to Segmentation on the MITK (v2022.10) board.
May 12 2022, 11:07 AM · Next Milestone