First experiment is valid. Tools are enabled only after the step 9 reinit.
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Jul 12 2022
Jul 12 2022
• s349i added a revision to T28180: [Segmentation] Showing a previously hidden reference image requires a reinit: Restricted Differential Revision.
kalali added a revision to T25105: UpdateStatusBar duplicates business logic: Restricted Differential Revision.
• s349i added a comment to T28180: [Segmentation] Showing a previously hidden reference image requires a reinit.
Jul 11 2022
Jul 11 2022
Deleted branch from rMITK MITK: feature/T29228-MITKExtensionDoc.
kislinsk committed rMITK76a3660b6d5e: Parse documentation of MITK extensions (authored by kislinsk).
Parse documentation of MITK extensions
Fix links and images
kislinsk committed rMITKcaf88e206d78: Remove duplicate plugin lists in documentation (authored by kislinsk).
Remove duplicate plugin lists in documentation
kislinsk committed rMITK68346568dc60: Merge branch 'feature/T29228-MITKExtensionDoc' into develop (authored by kislinsk).
Merge branch 'feature/T29228-MITKExtensionDoc' into develop
Pushed new branch to rMITK MITK: feature/T29228-MITKExtensionDoc.
kislinsk renamed T28787: Support outlines of binary images in 3-d render windows from Support uutlines of binary images in 3-d render windows to Support outlines of binary images in 3-d render windows.
Will be fixed in conjunction with T25105: UpdateStatusBar duplicates business logic.
kalali added a revision to T28762: [Interaction] Remove deprecated / unused interaction files: Unknown Object (Differential Revision).
kalali updated the task description for T28762: [Interaction] Remove deprecated / unused interaction files.
I worked on related topics last week and found some solutions for this problem (and also solving the parent task).
Some questions remain, though:
kalali added a revision to T29222: SlicesCoordinator is not implemented / used and can be removed: Unknown Object (Differential Revision).
a178n triaged T29227: Remove vestigial UI element "No. of extra Modalities" spinbox as Normal priority.
a178n added a comment to T28866: [Segmentation] Redundant label "recomputation" for Otsu/Watershed (& nnUNet) when any of the Preview-generated labels are selected to Confirm.
Deleted branch from rMITK MITK: feature/T28866-timepointaware-segmentation.
Deleted branch from rMITK MITK: release/T29226-2022-Week-28.
Merge branch 'master' into develop
2022 Week 28 (Mid July)
Pushed new branch to rMITK MITK: release/T29226-2022-Week-28.
Jul 8 2022
Jul 8 2022
kislinsk added a parent task for T29225: Rule Checker for FlowBench: T29157: NCT ISSO Annotation Support with MITK Segmentation Flow.
Jul 7 2022
Jul 7 2022
s434n closed T29213: [Levelwindow] Preset definition does not allow floating point numbers as Resolved.
standardize setting of level window values
Standardize setting of level window values
Jul 6 2022
Jul 6 2022
Pushed new branch to rMITK MITK: bugfix/T29224-confirmbutton-disable.
a178n committed rMITK85d669d35739: Migrate to code from QmitknnUNetToolSlots.cpp file (authored by a178n).
Migrate to code from QmitknnUNetToolSlots.cpp file
Remove QmitknnUNetToolSlots.cpp file
a178n committed rMITKd0208401ed1d: Merge QmitknnUNetToolSlots.cpp & QmitknnUNetToolGUI.cpp T29205 (authored by a178n).
Merge QmitknnUNetToolSlots.cpp & QmitknnUNetToolGUI.cpp T29205
Jul 4 2022
Jul 4 2022
a178n closed T29201: Update checklist for pretrained model download, a subtask of T29154: Show available Tasks for Download in the nnUnet GUI, as Resolved.
Updated checklist file Checklist Segmentation-3D Segmentation-nnUNet_EN.docx
a178n closed T29202: Update doku for pretrained model download, a subtask of T29154: Show available Tasks for Download in the nnUnet GUI, as Resolved.
nnUNet download model doc update
nnUNet download model documentation
a178n closed T29199: Move model download to a different thread., a subtask of T29187: Add GUI elements to parse and show available models, as Resolved.
a178n closed T29187: Add GUI elements to parse and show available models, a subtask of T29154: Show available Tasks for Download in the nnUnet GUI, as Resolved.
a178n committed rMITK6cf530da4bbd: Merge branch 'develop' into feature/T29187-nnunet-show-download-models (authored by a178n).
Merge branch 'develop' into feature/T29187-nnunet-show-download-models
a178n committed rMITK3e0a914ee69f: Introducing download option for available models (authored by a178n).
Introducing download option for available models
Json API changes
a178n committed rMITK77691d4fea2b: nnUNet pretrained models can now be downloaded from MITK (authored by a178n).
nnUNet pretrained models can now be downloaded from MITK
Improving download status messages
Code refactor changes
PointerAlignment Right formatting changes
a178n committed rMITK7103a334f96f: nnUNet download option for available pretrained models (authored by a178n).
nnUNet download option for available pretrained models
a178n closed T29186: nnUNet Python: Export available model information as JSON file, a subtask of T29154: Show available Tasks for Download in the nnUnet GUI, as Resolved.
a178n added a project to T29186: nnUNet Python: Export available model information as JSON file: MITK (v2022.10).
PR was accepted by Fabian.
neher added a comment to T29223: Vergleichsmodell: Stufen des diffusen Befalls (Radiologen-Messung).
Spalte mit Klassen: DB T1&T2&Diff
MarkusWennmann triaged T29223: Vergleichsmodell: Stufen des diffusen Befalls (Radiologen-Messung) as Normal priority.
Jul 1 2022
Jul 1 2022
The second step of the GSP process is clearer: @j806e and @m700r managed to reproduce the results of the models used in the EndoCV challenge.
Jul 1 2022, 4:17 PM · Restricted Project
Jun 30 2022
Jun 30 2022
kalali added a comment to T29220: StatusBar info is dependent on the pointer position, not on the crosshair / mouse click.
I think this ultimately leads to these two tasks: T25105: UpdateStatusBar duplicates business logic and T19470: Cleanup DisplayInteractor with the goal to remove the UpdateStatusBar-function completely from the mentioned classes and handle the events correctly, e.g. inside the SliceNavigationController or similar. Not only would this remove the mentioned redundancy of the function but also take away the responsibility for updating from the mentioned classes and give it to a more related class.
kalali added a comment to T29220: StatusBar info is dependent on the pointer position, not on the crosshair / mouse click.
This is probably caused by DisplayActionEventBroadcast (was DisplayInteractor before).
I've replaced the function used from Modules/Segmentation/Algorithms/itkContourExtractor2DImageFilter.h with a Unary Functor that uses itk only. The file is no longer useful. Maybe I'll delete it and close this if no one objects. The itk file with the same name will be superseded by the one provided by itk with the same name.
Jun 29 2022
Jun 29 2022
a178n updated subscribers of T29186: nnUNet Python: Export available model information as JSON file.
PR created on GitHub: https://github.com/MIC-DKFZ/nnUNet/pull/1094
kalali added a subtask for T26496: [mxn multi widget] Re-initializations reset all render windows: Unknown Object (Maniphest Task).
kalali removed a subtask for T28578: [mxn multi widget] Optimization of the mxn multi widget: Unknown Object (Maniphest Task).
kislinsk removed a project from T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label : Request for Discussion.
kislinsk added a revision to T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: Unknown Object (Differential Revision).
kislinsk added a revision to T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: Restricted Differential Revision.
Remove saggital as view direction
kalali committed rMITK1e23ae1959dd: Remove misspelled "sagital" in miscellaneous files (authored by kalali).
Remove misspelled "sagital" in miscellaneous files