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May 12 2022

floca added a subtask for T27807: [MultiLabel Segmentation] Inspection of module and plugin: T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG).
May 12 2022, 5:50 PM · MITK (v2024.06)
floca added a parent task for T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG): T27807: [MultiLabel Segmentation] Inspection of module and plugin.
May 12 2022, 5:50 PM · MITK (v2024.06)
floca added a subtask for T27807: [MultiLabel Segmentation] Inspection of module and plugin: T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object.
May 12 2022, 5:50 PM · MITK (v2024.06)
floca added a parent task for T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object: T27807: [MultiLabel Segmentation] Inspection of module and plugin.
May 12 2022, 5:50 PM · MITK (v2024.06)
floca added a parent task for T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG): T23774: Implement helper to correctly (DICOM conformal) parameterize images (or other BaseData derived classes).
May 12 2022, 5:43 PM · MITK (v2024.06)
floca edited projects for T27578: 2021.1 Linux installer does not work on Fedora, added: MITK (v2022.10); removed MITK.
May 12 2022, 5:31 PM · MITK (v2022.10)
floca edited projects for T29110: [Segmentation] Optimize new segmentation view, added: MITK (v2022.10); removed MITK, Checklist.
May 12 2022, 10:29 AM · MITK (v2022.10)
kalali added a project to T19470: Cleanup DisplayInteractor: Next Milestone.
May 12 2022, 9:43 AM · MITK (v2022.10), Bugzilla

May 9 2022

kalali added a revision to T28524: Refactor LabelSetImage and associated classes.: Restricted Differential Revision.
May 9 2022, 2:53 PM · Next Milestone

May 8 2022

a178n added a project to T29154: Show available Tasks for Download in the nnUnet GUI: Request for Discussion.
May 8 2022, 12:17 PM · MITK (v2022.10)
a178n added a comment to T29154: Show available Tasks for Download in the nnUnet GUI.

One of the ways to accomplish this is to wrap the string output of nnUNet_print_available_pretrained_models command and extract the tasks + respective links. This however is non-trivial.

May 8 2022, 12:17 PM · MITK (v2022.10)

May 5 2022

kislinsk added a comment to T29076: [Segmentation] Pressing DEL should delete a label.

I was not able to react on these key events with event filters like it is done in the Data Manager as they seem to be swallowed by some other widget. Not gonna say it cannot be done but it seems like this task is tricky and potentially time consuming.

May 5 2022, 9:50 AM · MITK (v2024.06), Checklist

May 4 2022

kislinsk added a comment to T27136: Ensure correct pattern of mitk::WeakPointer::Lock().

Deleted branch from rMITK MITK: bugfix/T27136-FixWeakPointerUsage.

May 4 2022, 8:22 PM · Next Milestone, MITK
kislinsk closed T27136: Ensure correct pattern of mitk::WeakPointer::Lock() as Resolved by committing rMITK9235478ae848: Fix weak pointer usage.
May 4 2022, 8:22 PM · Next Milestone, MITK

May 3 2022

floca triaged T29161: [Segmentation] Extend flow bench control view to support worklists as Normal priority.
May 3 2022, 6:20 PM · MITK (v2022.10)
floca triaged T29160: [Segmentation] Worklist specification, data structure and io functions as Normal priority.
May 3 2022, 6:16 PM · MITK (v2022.10)
kislinsk added a revision to T27136: Ensure correct pattern of mitk::WeakPointer::Lock(): Restricted Differential Revision.
May 3 2022, 5:55 PM · Next Milestone, MITK
kislinsk added a comment to T27136: Ensure correct pattern of mitk::WeakPointer::Lock().

Pushed new branch to rMITK MITK: bugfix/T27136-FixWeakPointerUsage.

May 3 2022, 5:50 PM · Next Milestone, MITK
floca triaged T29159: [Segmentation] Flow bench worklist feature as Normal priority.
May 3 2022, 5:31 PM · MITK (v2022.10)
floca triaged T29158: [Segmentation] Custom list for optional label names as Normal priority.
May 3 2022, 5:28 PM · MITK (v2022.10)
kislinsk claimed T27136: Ensure correct pattern of mitk::WeakPointer::Lock().
May 3 2022, 3:13 PM · Next Milestone, MITK

May 2 2022

kislinsk closed T28244: [Segmentation] Fast Marching Tool not really responsive for large images as Invalid.
May 2 2022, 8:32 AM · MITK, Next Milestone
kislinsk closed T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value as Invalid.
May 2 2022, 8:31 AM · MITK, Next Milestone, Missing Info, Request for Discussion
kislinsk closed T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value, a subtask of T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms, as Invalid.
May 2 2022, 8:31 AM · MITK (v2024.06)

Apr 30 2022

floca added a comment to T28991: [Segmentation] 3D tools overwrite / remove previous mask if reconfirmed.
In T28991#237063, @kalali wrote:

This was not meant as a criticism but just to bring this behavior to the attention of the user. Because it is important to realize what's happening, to understand that a new mask was created and the old one was overwritten.

Thank you for the clarification. 🙏

Apr 30 2022, 8:11 PM · MITK (v2022.10)

Apr 29 2022

floca reopened T27136: Ensure correct pattern of mitk::WeakPointer::Lock() as "Open".
Apr 29 2022, 3:35 PM · Next Milestone, MITK
floca reopened T27354: Make conversion functions for different DataNode lists/vector types publicly available as "Open".
Apr 29 2022, 3:33 PM · MITK (v2024.06), Restricted Project
floca reopened T27182: Extend CLMatchPointReg MiniApp and move from Classification to Matchpoint module as "Open".
Apr 29 2022, 3:31 PM · MITK (v2023.12), Restricted Project
floca reopened T27120: Remove old deprecated property names of DICOM information as "Open".
Apr 29 2022, 3:28 PM · MITK (v2024.06), Request for Discussion
a178n triaged T29154: Show available Tasks for Download in the nnUnet GUI as Normal priority.
Apr 29 2022, 2:40 PM · MITK (v2022.10)
a178n closed T29071: Update Checklist as Resolved.
Apr 29 2022, 2:35 PM · MITK, Next Milestone
a178n closed T29134: Documentation Update as Resolved.
Apr 29 2022, 2:34 PM · MITK, Next Milestone
kalali updated the task description for T25804: [Selection concept] Set 'selected' property when using the new selection concept.
Apr 29 2022, 2:17 PM · MITK (v2024.06), Request for Discussion
a178n added a comment to T29066: Change GUI order for "Task" and "Configuration".

Deleted branch from rMITK MITK: feature/T29066-nnunet-diff-fix.

Apr 29 2022, 1:59 PM · MITK, Next Milestone
a178n added a comment to T29134: Documentation Update.

Deleted branch from rMITK MITK: feature/T29134-nnUnet-doku-update.

Apr 29 2022, 1:56 PM · MITK, Next Milestone
a178n closed T29068: Multi-Modal Prediction : Auto load no.of modalities and modal order on the GUI from pickle file as Resolved.
Apr 29 2022, 1:46 PM · MITK, Next Milestone
a178n closed T29065: Check if RESULTS_FOLDER environment variable exist and get the directory as Resolved.
Apr 29 2022, 1:45 PM · MITK, Next Milestone
a178n closed T29064: Remember last used Python Path as Resolved.
Apr 29 2022, 1:45 PM · MITK, Next Milestone
a178n closed T29061: Validate the manually selected Python virtual environments as Resolved.
Apr 29 2022, 1:45 PM · MITK, Next Milestone
a178n closed T29066: Change GUI order for "Task" and "Configuration", a subtask of T29065: Check if RESULTS_FOLDER environment variable exist and get the directory, as Resolved.
Apr 29 2022, 1:44 PM · MITK, Next Milestone
a178n closed T29066: Change GUI order for "Task" and "Configuration" as Resolved.
Apr 29 2022, 1:44 PM · MITK, Next Milestone
kislinsk edited projects for T16153: [Segmentation] Jump to center of mass of segmentation on click, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2023.04), Bugzilla
kislinsk edited projects for T26294: Should we move DICOMPropertyPath helper to Core, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), DICOM
kislinsk edited projects for T27189: REST API for data storage, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Restricted Project, Request for Discussion
kislinsk edited projects for T24799: Optimize DicomRTIOMimeTypes, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T25305: Property enums of DICOM module are not supported by scene serialization, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Restricted Project
kislinsk edited projects for T29076: [Segmentation] Pressing DEL should delete a label, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Checklist
kislinsk edited projects for T28852: [DICOM] support temporal position and encoding for MR images, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27339: Provide public MITK ModelFit installer on a regular basis, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared
kislinsk edited projects for T27031: [Image statistics] Define identifier for statistics and histogram, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27269: PlanarCircle shrinks in size when moved towards image boundaries, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27451: [Registration] Mapper: Changed default level/window after identity mapping , added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared
kislinsk edited projects for T27133: [Segmentation] Is QmitkDataSelectionWidget needed anymore?, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27495: [Registration] Evaluator/Manipulator wipe mode is lacking one click behind, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared
kislinsk edited projects for T27258: [Image statistics] Deprecate QmitkImageStatisticsCalculationJob , added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27270: Planar figures are inconsistently bound by reference image, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27149: [Segmentation] Interpolation nodes / position nodes are not correctly hidden, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27846: [MITKDoc] Segmentation Flow view documentation, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27847: [MITKDoc] Chart Example view documentation, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27746: New data selection concept for Fit Generator Demo View, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27608: [MITKDoc] Documentation Refurbish - Developer Manual, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared
kislinsk edited projects for T28146: Rework how SegTool2D should add contour markers, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27834: [MITKDoc] Revise CEST views documentation, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T28244: [Segmentation] Fast Marching Tool not really responsive for large images, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK, Next Milestone
kislinsk edited projects for T28480: [Checklist] [Test data] Define publicly available location to store user test data, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T28937: [ModelFit] Rethink mitkT2DecayModel, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T29026: [File Loading] File reading options for surface files are not remembered, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T29093: [Image Cropper] Warning of rotated geometry not removed after reinit, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2022.10), Checklist
kislinsk edited projects for T29106: [Segmentation Options] "show only selected nodes" is not immediately applied, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2022.10), Checklist
kislinsk edited projects for T29112: Hover state of planar figures is not reset when the mouse pointer is out of scene, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared
kislinsk edited projects for T29061: Validate the manually selected Python virtual environments, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK, Next Milestone
kislinsk edited projects for T29101: [3D Segmentation] Region Growing Tool - Generated Segmentation darkens the ambient image, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK, Checklist
kislinsk edited projects for T24738: [Selection concept] Thumbnail preview of images for datastorage inspectors, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Restricted Project
kislinsk edited projects for T22533: rework RTSTRUCT visualization, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Restricted Project
kislinsk edited projects for T18014: write tool interaction tests for segmentation, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Bugzilla
kislinsk edited projects for T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared, Restricted Project
kislinsk edited projects for T25098: Mapper (partially?) do not handle images correctly if they are out of time bound, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T25192: Enable DICOM SEG conversion for nrrd segmentations, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), MICO (Demo MICCAI 2018)
kislinsk edited projects for T26288: MRI Perfusion view should only generate concentration images once, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · Next Milestone, MITK (v2024.06)
kislinsk edited projects for T25445: MultiLabel segmentation mapper is very slow, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label , added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2023.04)
kislinsk edited projects for T26098: [ImageStatistics] Histogram Statistics need to be tested, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Restricted Project
kislinsk edited projects for T26950: Add rule class for DICOM Seg relations to source image, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared
kislinsk edited projects for T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG), added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T26972: Dialog and plugin layout seems to be not shown correctly on laptops, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Missing Info
kislinsk edited projects for T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification , added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared
kislinsk edited projects for T27060: [Segmentation] Rework InterpolationWidget to not depend on data manager view directly, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27032: [Image statistics] Discuss Histogram with respect to the new multi node selection, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27196: Rewrite packaging of MITK, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared
kislinsk edited projects for T27154: Define clean workflow for segmentation copying, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27271: [Image Statistics] Double clicking to isolate one graph only works on already enabled graphs, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27284: [Image Statistic] Histogram is only supported with one image and <=1 ROI, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27357: Check/Update DICOMTags of interest, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Cleared, HiGHmed
kislinsk edited projects for T27306: [statistics] Errors caused in MitkChart when using histogram and intensity profile widgets., added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2023.12)
kislinsk edited projects for T27377: Suppress or fix all build warnings , added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06), Restricted Project
kislinsk edited projects for T27285: [Image Statistics] QmitkChart widget should support ID or allow control over labels, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK (v2024.06)
kislinsk edited projects for T27320: No LocalStorage for PlaneGeometryDataVtkMapper3D, added: Next Milestone, MITK; removed MITK (v2022.04).
Apr 29 2022, 1:39 PM · MITK, Pull Request
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