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Apr 7 2021

floca edited projects for T26970: [Segmentation] Picking tool: When no region is picked, selected node just gets unselected, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 9:38 PM · MITK (v2021.10), Cleared
floca added a subtask for T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox: T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep.
Apr 7 2021, 9:37 PM · MITK (v2022.10), Cleared
floca added a parent task for T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep: T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox.
Apr 7 2021, 9:37 PM · MITK (v2024.06)
floca edited projects for T28437: 3D region growing may have issues when the seed point is on a pixel with value 0, added: MITK (v2021.10); removed MITK.
Apr 7 2021, 9:34 PM · MITK (v2021.10)
• kleina committed rOBSHYPPOPY74953c92ecff: Merge branch 'fix/T28410-direct-call-of-blackbox-internal' into dev (authored by • kleina).
Merge branch 'fix/T28410-direct-call-of-blackbox-internal' into dev
Apr 7 2021, 3:34 PM
• kleina committed rOBSHYPPOPY7e25cd15aafb: Merge branch 'master' into dev (authored by • kleina).
Merge branch 'master' into dev
Apr 7 2021, 3:34 PM
• kleina committed rOBSHYPPOPY4b872a7644c7: Don't call internal blackbox_func dirctly. Instead we use blackbox.call() now. (authored by • kleina).
Don't call internal blackbox_func dirctly. Instead we use blackbox.call() now.
Apr 7 2021, 3:34 PM
• kleina moved T28300: [MPI] MPI as a general dependency might be problematic from Backlog to In Progress on the Hyppopy board.
Apr 7 2021, 2:19 PM · Request for Discussion, Hyppopy
• kleina moved T28410: MPISolverWrapper's direct call of blackbox internal seems wrong from In Progress to Done on the Hyppopy board.
Apr 7 2021, 2:19 PM · Hyppopy
• kleina moved T26148: Integrate virtual energy function for evaluations tasks from In Progress to Done on the Hyppopy board.
Apr 7 2021, 2:19 PM · Hyppopy
• kleina closed T28410: MPISolverWrapper's direct call of blackbox internal seems wrong as Resolved.

fixed in https://github.com/MIC-DKFZ/Hyppopy/tree/fix/T28410-direct-call-of-blackbox-internal

Apr 7 2021, 2:18 PM · Hyppopy
• kleina added a comment to T28410: MPISolverWrapper's direct call of blackbox internal seems wrong.

I agree with the raised point. I checked the classes again and do not see a valid reason behind the blackbox_func call. I will fix this.

Apr 7 2021, 1:48 PM · Hyppopy
• kleina claimed T28410: MPISolverWrapper's direct call of blackbox internal seems wrong.
Apr 7 2021, 1:43 PM · Hyppopy
• kleina moved T28410: MPISolverWrapper's direct call of blackbox internal seems wrong from Backlog to In Progress on the Hyppopy board.
Apr 7 2021, 1:43 PM · Hyppopy
• kleina added a project to T28410: MPISolverWrapper's direct call of blackbox internal seems wrong: Hyppopy.
Apr 7 2021, 1:43 PM · Hyppopy
• kleina moved T28298: Check for all print outputs in code base and convert them to log messages from Backlog to In Progress on the Hyppopy board.
Apr 7 2021, 1:42 PM · Hyppopy
• kleina claimed T28298: Check for all print outputs in code base and convert them to log messages.
Apr 7 2021, 1:41 PM · Hyppopy
isensee added a comment to T28437: 3D region growing may have issues when the seed point is on a pixel with value 0.

Link to data: https://sas.desy.de/index.php/s/JQgZT5xLCk6RXDg

Apr 7 2021, 1:32 PM · MITK (v2021.10)
kalali moved T27807: [MultiLabel Segmentation] Inspection of module and plugin from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 7 2021, 12:29 PM · MITK (v2024.06)
kalali edited projects for T27807: [MultiLabel Segmentation] Inspection of module and plugin, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 12:29 PM · MITK (v2024.06)
kalali edited projects for T28250: [LevelWindowManager] Different behavior in AutoTopMost case and fallback case, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 12:28 PM · Breaking Change, MITK (v2021.10)
kalali moved T28108: [Release Checklists] Prepare release checklists from Backlog to Tests/Checklists on the MITK (v2021.10) board.
Apr 7 2021, 12:26 PM · MITK
kalali edited projects for T28108: [Release Checklists] Prepare release checklists, added: MITK (v2021.10); removed MITK.
Apr 7 2021, 12:26 PM · MITK
kalali moved T27711: Rename segmentation image selection label from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 7 2021, 12:25 PM · MITK (v2021.10)
kalali moved T27713: [Segmentation] Disable "New" button when no image is selected from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 7 2021, 12:24 PM · MITK (v2021.10), Request for Discussion
kalali moved T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 7 2021, 12:24 PM · MITK (v2022.10), Cleared
kalali moved T28181: [Segmentation] Should warning messages be passed on to the UI? from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 7 2021, 12:24 PM · MITK (v2024.06)
floca moved T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value from Backlog to Cycle on the MITK (v2021.10) board.
Apr 7 2021, 12:02 PM · MITK, Next Milestone, Missing Info, Request for Discussion
isensee created T28437: 3D region growing may have issues when the seed point is on a pixel with value 0.
Apr 7 2021, 11:59 AM · MITK (v2021.10)
kalali renamed T28262: TimeGeometry inconsistent documentation and implementation of time bounds and checks from TimeGeometry inconsistent documentation and implmentation of time bounds and checks to TimeGeometry inconsistent documentation and implementation of time bounds and checks.
Apr 7 2021, 11:24 AM · MITK (v2024.06)
kalali edited projects for T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 11:12 AM · MITK (v2022.10), Cleared
kalali edited projects for T18014: write tool interaction tests for segmentation, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 11:11 AM · MITK (v2024.06), Bugzilla
kalali edited projects for T28358: Data Manager context menu items added multiple times for multi-selections, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 11:03 AM · MITK (v2021.10)
kalali edited projects for T27711: Rename segmentation image selection label, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 11:02 AM · MITK (v2021.10)
kalali edited projects for T28181: [Segmentation] Should warning messages be passed on to the UI?, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 11:01 AM · MITK (v2024.06)
kalali edited projects for T27713: [Segmentation] Disable "New" button when no image is selected, added: MITK (v2021.10); removed MITK.
Apr 7 2021, 11:00 AM · MITK (v2021.10), Request for Discussion
kalali updated subscribers of T26878: Opacity / transparency of a data node cannot be changed anymore.

Does not seem to happen anymore. Can somebody confirm, e.g. @kislinsk?

Apr 7 2021, 10:59 AM · MITK
floca edited projects for T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 10:55 AM · MITK (v2024.06)
floca edited projects for T28262: TimeGeometry inconsistent documentation and implementation of time bounds and checks, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 10:53 AM · MITK (v2024.06)
floca edited projects for T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 10:52 AM · MITK (v2021.10), Missing Info, Restricted Project
floca edited projects for T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 10:51 AM · MITK, Next Milestone, Missing Info, Request for Discussion
kislinsk edited projects for T24398: Dicom plugin: Retrieve does not work, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 9:12 AM · MITK (v2024.06)
• kleina added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

Sorry, I was on vacation.

Apr 7 2021, 9:03 AM · Next Milestone, MITK

Apr 6 2021

kislinsk edited projects for T27432: Error loading DCE-MRI DICOM image, added: MITK (v2021.10); removed MITK, Next Milestone.
Apr 6 2021, 4:29 PM · MITK, DICOM, Cleared
kislinsk closed T28263: [2-d surface mapper] Surface is drawn in every time step even if it has limited time bounds as Resolved.
Apr 6 2021, 4:28 PM · MITK (v2021.02)
kislinsk added a comment to T27413: MITK Workflow Q&A.

We now have some manuals but we still need an example-based guide for reviews/Arcanist.

Apr 6 2021, 4:24 PM · MITK, Request for Discussion
kislinsk updated the task description for T27413: MITK Workflow Q&A.
Apr 6 2021, 4:23 PM · MITK, Request for Discussion
kislinsk edited projects for T27701: Overhaul or remove PluginGenerator, added: MITK (v2021.10); removed MITK, Next Milestone.
Apr 6 2021, 4:21 PM · MITK, Next Milestone
kislinsk lowered the priority of T27578: 2021.1 Linux installer does not work on Fedora from Unbreak Now! to High.
Apr 6 2021, 4:21 PM · MITK (v2022.10)
kislinsk edited projects for T28172: Include MITK-ProjectTemplate in MITK Differential builds, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 6 2021, 4:12 PM · MITK (v2021.10), CI
kislinsk edited projects for T28422: Multilabel color map does not produce unique colors, added: MITK (v2021.10); removed MITK.
Apr 6 2021, 4:12 PM · MITK (v2021.10)
kislinsk edited projects for T28421: Use whole image grey value must always be executed when switching colormap to 'Multilabel', added: MITK (v2021.10); removed MITK.
Apr 6 2021, 4:11 PM · MITK (v2021.10)
kislinsk added a hashtag to MITK (v2021.10): #mitk-2021-10.
Apr 6 2021, 4:11 PM
berker updated berker.
Apr 6 2021, 2:07 PM
menjivar moved T28034: Deep Learning for Sepsis Classification on Parameter Images from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Apr 6 2021, 12:12 PM · Restricted Project
kislinsk triaged T28421: Use whole image grey value must always be executed when switching colormap to 'Multilabel' as High priority.
Apr 6 2021, 12:48 AM · MITK (v2021.10)
kislinsk triaged T28422: Multilabel color map does not produce unique colors as High priority.
Apr 6 2021, 12:46 AM · MITK (v2021.10)
kislinsk created MITK (v2021.10).
Apr 6 2021, 12:41 AM
kislinsk triaged T28428: Re-enable code coverage testing in MITK CI as Normal priority.
Apr 6 2021, 12:40 AM · Auto-closed, CI, MITK

Apr 2 2021

kalali added a project to T28428: Re-enable code coverage testing in MITK CI: CI.
Apr 2 2021, 11:08 AM · Auto-closed, CI, MITK

Apr 1 2021

nolden created T28428: Re-enable code coverage testing in MITK CI.
Apr 1 2021, 2:04 PM · Auto-closed, CI, MITK
menjivar closed T28032: Data visualization as Resolved.
Apr 1 2021, 12:30 PM · Restricted Project
s669m lowered the priority of T28402: gvisor pods are crashing (CrashLoopBackOff) from Normal to Low.
Apr 1 2021, 10:16 AM · Request for Discussion, Kaapana (internal)
s669m moved T28402: gvisor pods are crashing (CrashLoopBackOff) from In Progress to Resolved on the Kaapana (internal) board.
Apr 1 2021, 10:16 AM · Request for Discussion, Kaapana (internal)
s669m moved T28426: gvisor pods unable to access internet ? Proxy issues ?? from In Progress to Resolved on the Kaapana (internal) board.
Apr 1 2021, 10:15 AM · Request for Discussion, Kaapana (internal)
s669m moved T28426: gvisor pods unable to access internet ? Proxy issues ?? from Discussion to In Progress on the Kaapana (internal) board.
Apr 1 2021, 10:04 AM · Request for Discussion, Kaapana (internal)
s669m lowered the priority of T28426: gvisor pods unable to access internet ? Proxy issues ?? from Normal to Low.
Apr 1 2021, 8:28 AM · Request for Discussion, Kaapana (internal)

Mar 31 2021

s669m added a comment to T28387: Testing Gvisor with Kube8s.

Created a bug in google gvisor, and one guy is helping us.

Mar 31 2021, 12:18 PM · Restricted Project
s669m triaged T28426: gvisor pods unable to access internet ? Proxy issues ?? as Normal priority.
Mar 31 2021, 12:10 PM · Request for Discussion, Kaapana (internal)
s522r added a member for MIC: d246a.
Mar 31 2021, 10:21 AM
• thomass added a comment to T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior.

Pushed new branch to rMITK MITK: feature/T28406-PatchForTestingLiveWireBehavior.

Mar 31 2021, 9:40 AM · MITK
• thomass claimed T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior.
Mar 31 2021, 9:30 AM · MITK
• thomass added a comment to T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior.

First patch to change following behavior (for user testing only):

  • The linesegments are added with each mouseclick of the users without the cost function but by connecting start and endpoint
  • If the user double-clicks on the image, the last point is connected with the first adding an additional segment.
Mar 31 2021, 9:20 AM · MITK

Mar 30 2021

paul jaeger <p.jaeger@dkfz.de> committed rREGRCNNfac483a45dfb: update requirements (authored by paul jaeger <p.jaeger@dkfz.de>).
update requirements
Mar 30 2021, 1:56 PM
paul jaeger <p.jaeger@dkfz.de> committed rMDTPUBLICd0d880465937: update pillow requirement (authored by paul jaeger <p.jaeger@dkfz.de>).
update pillow requirement
Mar 30 2021, 1:54 PM
s434n triaged T28424: Increase consistentcy of RT dose iso-color preset customization as Low priority.
Mar 30 2021, 9:48 AM · Auto-closed, MITK

Mar 29 2021

isensee updated the task description for T28422: Multilabel color map does not produce unique colors.
Mar 29 2021, 1:20 PM · MITK (v2021.10)
isensee updated the task description for T28421: Use whole image grey value must always be executed when switching colormap to 'Multilabel'.
Mar 29 2021, 1:20 PM · MITK (v2021.10)
isensee updated the task description for T28422: Multilabel color map does not produce unique colors.
Mar 29 2021, 1:17 PM · MITK (v2021.10)
isensee created T28422: Multilabel color map does not produce unique colors.
Mar 29 2021, 1:17 PM · MITK (v2021.10)
isensee renamed T28421: Use whole image grey value must always be executed when switching colormap to 'Multilabel' from Use whole image grey value must always be executed when switching colormap to to Use whole image grey value must always be executed when switching colormap to 'Multilabel'.
Mar 29 2021, 1:07 PM · MITK (v2021.10)
isensee created T28421: Use whole image grey value must always be executed when switching colormap to 'Multilabel'.
Mar 29 2021, 12:59 PM · MITK (v2021.10)

Mar 27 2021

kislinsk closed T26969: [Segmentation] New segmentation dialog: Change color twice and aborting the second time chages color to red, a subtask of T28176: [Segmentation] Inspection of module and plugin, as Resolved.
Mar 27 2021, 4:48 PM · MITK (v2024.06)
kislinsk closed T26969: [Segmentation] New segmentation dialog: Change color twice and aborting the second time chages color to red as Resolved.
Mar 27 2021, 4:48 PM · MITK
kislinsk closed T28383: [Multilabel Segmentation] In case of two layers, a change of visibility is not updated automatically as Resolved.
Mar 27 2021, 4:47 PM · Next Milestone, MITK

Mar 26 2021

kislinsk closed T28420: 2021 Week 12 (Late March) as Resolved.
Mar 26 2021, 4:44 PM · MITK
kislinsk edited the content of Changelog.
Mar 26 2021, 4:43 PM · MITK
kislinsk added a comment to T28420: 2021 Week 12 (Late March).

Deleted branch from rMITK MITK: release/T28420-2021-Week-12.

Mar 26 2021, 4:40 PM · MITK
kislinsk committed rMITK9ccbc4d1310b: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Mar 26 2021, 4:40 PM
kislinsk committed rMITK4bf9b4da41b5: Make build system aware of a new patch for ITK (authored by kislinsk).
Make build system aware of a new patch for ITK
Mar 26 2021, 4:39 PM
kislinsk committed rMITK3447b0ecffd5: Multilabel segmentation label visibility (authored by • thomass).
Multilabel segmentation label visibility
Mar 26 2021, 4:39 PM
kislinsk committed rMITK0a6dee813c1e: Merge remote-tracking branch 'origin/develop' into release/T28420-2021-Week-12 (authored by kislinsk).
Merge remote-tracking branch 'origin/develop' into release/T28420-2021-Week-12
Mar 26 2021, 4:39 PM
kislinsk committed rMITKd77d800c1ace: Merge branch 'arcpatch-D477' into release/T28420-2021-Week-12 (authored by kislinsk).
Merge branch 'arcpatch-D477' into release/T28420-2021-Week-12
Mar 26 2021, 4:39 PM
kislinsk committed rMITKaadc05393e01: 2021 Week 12 (Late March) (authored by kislinsk).
2021 Week 12 (Late March)
Mar 26 2021, 4:39 PM
kislinsk edited the content of 2021 Week 12 (Late March).
Mar 26 2021, 4:34 PM
kislinsk edited the content of MITK v2021.02.
Mar 26 2021, 3:54 PM
kislinsk added a comment to T28420: 2021 Week 12 (Late March).

Pushed new branch to rMITK MITK: release/T28420-2021-Week-12.

Mar 26 2021, 3:09 PM · MITK
kislinsk triaged T28420: 2021 Week 12 (Late March) as Normal priority.
Mar 26 2021, 3:08 PM · MITK
kislinsk created an object: 2021 Week 12 (Late March).
Mar 26 2021, 3:07 PM
floca committed rMITK165ad5f01412: T28356 Make_use_of_coordinate_precision_check (authored by floca).
T28356 Make_use_of_coordinate_precision_check
Mar 26 2021, 12:41 PM
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