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Mar 15 2021

floca edited parent tasks for T25496: Visualize RTDOSE correctly, added: Unknown Object (Maniphest Task); removed: Unknown Object (Maniphest Task).
Mar 15 2021, 11:19 PM · MITK
floca added a parent task for T25496: Visualize RTDOSE correctly: Unknown Object (Maniphest Task).
Mar 15 2021, 11:18 PM · MITK
floca merged Restricted Maniphest Task into T25496: Visualize RTDOSE correctly.
Mar 15 2021, 11:17 PM · MITK
a178n added a comment to T28354: Update MITK documentation on CMAKE build for plugins.
  1. I want to use a plugin, how do I activate it?
Mar 15 2021, 4:55 PM · Next Milestone, MITK (v2021.10)
nolden added a comment to T27968: CTP gets stuck on large import.

Not sure if this is related:

Mar 15 2021, 1:47 PM · Kaapana (internal)
nolden removed a project from T28374: Workbench crashes after DICOM retrieval : Missing Info.
Mar 15 2021, 9:52 AM · Next Milestone, DICOM, MITK
nolden closed T28374: Workbench crashes after DICOM retrieval as Resolved.

@gaoh thanks for pointing there, I will close this one as a duplicate

Mar 15 2021, 9:51 AM · Next Milestone, DICOM, MITK
nolden added a comment to T28207: MITK DicomBrowser q/r Retrieve part crash.

Another option for testing is to use dicomserver.co.uk , I think it is preconfigured in the Workbench. It's a public DICOM endpoint and the data there differs, but 5 min ago I was able to reproduce the crash with a retrieval from there. Just activate the checkbox in the MITK config table , query last month, select a few patients and retrieve. Worked for me to reproduce the crash.

Mar 15 2021, 9:50 AM · MITK, Checklist
gaoh added a comment to T28374: Workbench crashes after DICOM retrieval .

T28207 describes how to test it without the wDB. When searching for DICOM query retrieve there are already different tasks open with all similar problems

Mar 15 2021, 9:39 AM · Next Milestone, DICOM, MITK

Mar 14 2021

t391x renamed T28377: Improve PyTorch DAS from Improve-PyTorch-DAS to Improve PyTorch DAS.
Mar 14 2021, 12:48 PM · IMSY, Photoacoustics
t391x created T28377: Improve PyTorch DAS.
Mar 14 2021, 12:48 PM · IMSY, Photoacoustics
t391x closed T28188: Integration of PyTorch Delay and Sum into Simpa as Resolved.

Was merged

Mar 14 2021, 12:45 PM · Photoacoustics, IMSY

Mar 13 2021

floca created T28376: Blackbox class - reorder the loss function call try.
Mar 13 2021, 10:33 AM · Hyppopy

Mar 12 2021

floca added projects to T28374: Workbench crashes after DICOM retrieval : Next Milestone, Missing Info.
Mar 12 2021, 9:08 PM · Next Milestone, DICOM, MITK
nolden triaged T28374: Workbench crashes after DICOM retrieval as High priority.
Mar 12 2021, 3:45 PM · Next Milestone, DICOM, MITK
s434n closed T28322: [Screenshot Maker] 3D Multiplanar screenshot does not return view to initial position as Resolved.
Mar 12 2021, 2:17 PM · MITK
s434n added a revision to T28322: [Screenshot Maker] 3D Multiplanar screenshot does not return view to initial position: Unknown Object (Differential Revision).
Mar 12 2021, 2:15 PM · MITK
s434n committed rMITKf80ac56d3cd7: Rotate camera back after multiplanar screenshot (authored by s434n).
Rotate camera back after multiplanar screenshot
Mar 12 2021, 2:10 PM
s434n committed rMITK70a48431c3c8: Rotate camera back after multiplanar screenshot (authored by s434n).
Rotate camera back after multiplanar screenshot
Mar 12 2021, 2:09 PM
kislinsk added a comment to T28172: Include MITK-ProjectTemplate in MITK Differential builds.

Started with Ubuntu 18.04 and 20.04 clients by adding the following script before the actual build. This is roughly what we are doing already in the Dashboard script.

Mar 12 2021, 10:10 AM · MITK (v2021.10), CI

Mar 11 2021

floca added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

@kleina : Which tool /script generated the masks? nnUnet?

Mar 11 2021, 3:35 PM · Next Milestone, MITK
floca added a comment to T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

It is, once again the precision of the geometry check. :sigh:

Mar 11 2021, 2:04 PM · Next Milestone, MITK
kislinsk triaged T28358: Data Manager context menu items added multiple times for multi-selections as Normal priority.
Mar 11 2021, 7:50 AM · MITK (v2021.10)
kislinsk added a project to T28356: MITK v2021.02 does not recognize loaded mask as segmentation: Next Milestone.
Mar 11 2021, 7:48 AM · Next Milestone, MITK
kislinsk updated subscribers of T28356: MITK v2021.02 does not recognize loaded mask as segmentation.

I had a first quick check and for example T1.nrrd and S.nrrd (and S.nrrd converted to LabelSetImage) have the same geometries. My first assumption would have been that they are different. @floca Any idea?

Mar 11 2021, 7:46 AM · Next Milestone, MITK

Mar 10 2021

s669m triaged T28357: Running Isolated container in Kaapana ( Instead of Default Docker) as Normal priority.
Mar 10 2021, 10:12 PM · Restricted Project, Kaapana (internal)
kleina updated the task description for T28356: MITK v2021.02 does not recognize loaded mask as segmentation.
Mar 10 2021, 3:29 PM · Next Milestone, MITK
kleina updated the task description for T28356: MITK v2021.02 does not recognize loaded mask as segmentation.
Mar 10 2021, 3:28 PM · Next Milestone, MITK
kleina triaged T28356: MITK v2021.02 does not recognize loaded mask as segmentation as High priority.
Mar 10 2021, 3:27 PM · Next Milestone, MITK
floca closed T27614: Equalize reinit behavior of Segmentation View and Multilabel Segmentation View as Wontfix.
Mar 10 2021, 10:08 AM · MITK
floca reopened T25316: ThemeIcon() of QmitkStyleManager and berryQtStyleManager does not work with eager plugins as "Open".
Mar 10 2021, 10:05 AM · MITK
floca reopened T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry as "Open".
Mar 10 2021, 10:03 AM · MITK (v2024.06), Cleared, Restricted Project
floca reopened T25042: How to handle update informations in heterogeneous time geometries and out of bound situations as "Open".
Mar 10 2021, 10:02 AM · MITK
floca reopened T24729: GetPropertyKeys() in DataNode should also return propertyKeys of BaseData as "Open".
Mar 10 2021, 10:01 AM · MITK (v2024.06)
floca reopened T22533: rework RTSTRUCT visualization as "Open".
Mar 10 2021, 9:56 AM · MITK (v2024.06), Restricted Project
floca reopened T25440: Image writer share priority with readers as "Open".
Mar 10 2021, 9:53 AM · Auto-closed, MITK
floca reopened T24799: Optimize DicomRTIOMimeTypes as "Open".
Mar 10 2021, 9:52 AM · MITK (v2024.06)
floca reopened T25307: Clean up remove deprecated dicom properties as "Open".
Mar 10 2021, 9:51 AM · MITK
floca reopened T24962: Refactor of LevelWindow and serialization of LevelWindowProperty as "Open".
Mar 10 2021, 9:50 AM · Auto-closed, MITK
floca reopened T27570: US DICOM images are read as 3D volume, a subtask of T27554: Handling of 2D and 2D+t sonographic (US) images, as Open.
Mar 10 2021, 9:48 AM · Restricted Project, MITK
floca reopened T27570: US DICOM images are read as 3D volume as "Open".
Mar 10 2021, 9:48 AM · Auto-closed, Missing Info, Restricted Project, MITK
kislinsk placed T27033: Clean up stale remote branches up for grabs.
Mar 10 2021, 9:43 AM · Auto-closed, MITK
floca reopened T26949: DICOM SEG - 3D segmentations with only one slice cannot be reloaded as DICOM SEG as "Open".
Mar 10 2021, 9:42 AM · Auto-closed, MITK, DICOM, Missing Info
kislinsk placed T27196: Rewrite packaging of MITK up for grabs.

Currently not actively working on this. Packaging seems to work for the moment except for Python (never did). I think this task will soon be revived with the work on Python in MITK by Kim-Celine and Ashis.

Mar 10 2021, 9:16 AM · MITK (v2024.06), Cleared
kislinsk archived MITK (v2021.02).
Mar 10 2021, 9:09 AM
kislinsk edited projects for T25305: Property enums of DICOM module are not supported by scene serialization, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Restricted Project
kislinsk edited projects for T26294: Should we move DICOMPropertyPath helper to Core, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), DICOM
kislinsk edited projects for T26970: [Segmentation] Picking tool: When no region is picked, selected node just gets unselected, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2021.10), Cleared
kislinsk edited projects for T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Cleared
kislinsk edited projects for T27149: [Segmentation] Interpolation nodes / position nodes are not correctly hidden, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06)
kislinsk edited projects for T27834: [MITKDoc] Revise CEST views documentation, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06)
kislinsk edited projects for T27608: [MITKDoc] Documentation Refurbish - Developer Manual, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Cleared
kislinsk edited projects for T27711: Rename segmentation image selection label, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2021.10)
kislinsk edited projects for T27846: [MITKDoc] Segmentation Flow view documentation, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06)
kislinsk edited projects for T28278: Image cropper doesn't work with PACS like mouse interaction, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · Next Milestone, MITK
kislinsk edited projects for T18014: write tool interaction tests for segmentation, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Bugzilla
kislinsk edited projects for T25445: MultiLabel segmentation mapper is very slow, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Request for Discussion
kislinsk edited projects for T25098: Mapper (partially?) do not handle images correctly if they are out of time bound, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06)
kislinsk edited projects for T26972: Dialog and plugin layout seems to be not shown correctly on laptops, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Missing Info
kislinsk edited projects for T27184: Clipping plane deformation tool doesn't show updates in 3d window, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · Next Milestone, MITK, Missing Info, Restricted Project
kislinsk edited projects for T27320: No LocalStorage for PlaneGeometryDataVtkMapper3D, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK, Pull Request
kislinsk edited projects for T27455: Go through pull requests, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Cleared
kislinsk edited projects for T27414: Adapt CMake version macro to generate version description with "no official release", added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Restricted Project, CI
kislinsk edited projects for T27377: Suppress or fix all build warnings , added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Restricted Project
kislinsk edited projects for T27571: Multilabel segmentation does not work with US DICOM images, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2021.10), Missing Info, Restricted Project
kislinsk edited projects for T27534: Generate batch file for PluginGenerator, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06)
kislinsk edited projects for T27458: Activate Test also for arc diff builds to avoid missed unit test errors, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), CI
kislinsk edited projects for T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06)
kislinsk edited projects for T27720: mitkPackageTest fails on Windows Nightlies, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06)
kislinsk edited projects for T28274: [Volume Visualization] Volume Rendering for 4D images does only work on timestep 0 or not at all, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · Restricted Project, MITK (v2022.04), Request for Discussion
kislinsk edited projects for T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2022.10), Cleared
kislinsk edited projects for T24398: Dicom plugin: Retrieve does not work, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06)
kislinsk edited projects for T28172: Include MITK-ProjectTemplate in MITK Differential builds, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2021.10), CI
kislinsk edited projects for T27413: MITK Workflow Q&A, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK, Request for Discussion
kislinsk edited projects for T27506: Extend checklists for segmentation view, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2022.04), Cleared
kislinsk edited projects for T28244: [Segmentation] Fast Marching Tool not really responsive for large images, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK, Next Milestone
kislinsk edited projects for T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2021.10), Missing Info, Restricted Project
kislinsk edited projects for T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK, Next Milestone, Missing Info, Request for Discussion
kislinsk closed T11900: ExtApp fails to load DICOM files if filename starts with a dot as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:02 AM · Auto-closed, Missing Info, MITK, Bugzilla
kislinsk closed T15551: Tutorial Step 6: region growing does not display results as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:02 AM · Auto-closed, MITK (v2021.02), Missing Info, Bugzilla
kislinsk closed T26949: DICOM SEG - 3D segmentations with only one slice cannot be reloaded as DICOM SEG as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:02 AM · Auto-closed, MITK, DICOM, Missing Info
kislinsk closed T27525: Problems while opening MITK scenes created with 2018.04 release with the current master as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:02 AM · Auto-closed, Missing Info, MITK (v2021.02)
kislinsk closed T27570: US DICOM images are read as 3D volume, a subtask of T27554: Handling of 2D and 2D+t sonographic (US) images, as Wontfix.
Mar 10 2021, 9:02 AM · Restricted Project, MITK
kislinsk closed T27570: US DICOM images are read as 3D volume as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:02 AM · Auto-closed, Missing Info, Restricted Project, MITK
kislinsk closed T19752: Fix extensibility of Data Manager context menu entries, a subtask of T25056: Refactor data manager context menu, as Wontfix.
Mar 10 2021, 9:01 AM · MITK (v2024.06), Noteworthy
kislinsk closed T25307: Clean up remove deprecated dicom properties as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · MITK
kislinsk closed T19752: Fix extensibility of Data Manager context menu entries as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T24962: Refactor of LevelWindow and serialization of LevelWindowProperty as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T24799: Optimize DicomRTIOMimeTypes as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · MITK (v2024.06)
kislinsk closed T25440: Image writer share priority with readers as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T19449: Render window not updated on non-auto-topmost data node selection. as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, Bugzilla, MITK
kislinsk closed T25513: Legend overlay of colormap as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, Restricted Project, Restricted Project, MITK
kislinsk closed Restricted Maniphest Task, a subtask of T25512: Restructure image statistics calculator, as Wontfix.
Mar 10 2021, 9:01 AM · MITK
kislinsk closed T21142: [0001467] Generalize Helper function StoreResultImages in mitkPixelBasedParameterFitImageGenerator.cpp as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK, Mantis
kislinsk closed T25560: rename MaskGenerator to MaskAdaptor as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25560: rename MaskGenerator to MaskAdaptor, a subtask of T25512: Restructure image statistics calculator, as Wontfix.
Mar 10 2021, 9:01 AM · MITK
kislinsk closed T25024: Image navigator slicing as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, Request for Discussion, MITK
kislinsk closed T24885: Coupled crosshair rotation out-of-view bug as Wontfix.

Hi there! 🙂

Mar 10 2021, 9:01 AM · Auto-closed, MITK
kislinsk closed T25563: Implement Requested region management correctly, a subtask of T25561: Optimize imageStatisticsContainer, as Wontfix.
Mar 10 2021, 9:01 AM · MITK
kislinsk closed T18414: Context menu item search behaves differently for single selection vs multiple selection, a subtask of T25056: Refactor data manager context menu, as Wontfix.
Mar 10 2021, 9:01 AM · MITK (v2024.06), Noteworthy